View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_high_19 (Length: 312)
Name: NF17580_high_19
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 35985568 - 35985823
Alignment:
| Q |
1 |
gttggagaagaaaggtcaattttaaatcattataattgatatcatatgtacttatatgacatgaaagacgcatggatatctaatggtacaacctccgatt |
100 |
Q |
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| T |
35985568 |
gttggagaagaaaggtcaatttcaaatccttataattgatatcatatgtacttatatgaaatgaaagacgcatcgatatttaatggtacaacctccgatt |
35985667 |
T |
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| Q |
101 |
ccacttaacagaaaaaagattagtgtgtttgttgtcattcaataagaaaaagatgctcatataatgatcccatttaaatgtacttctatggcatgaaagt |
200 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35985668 |
ccacttaactgaaaaaatattagtgtgtttgttgtcattcaataagaaaaagatgctcatataatgatcccatttaaatgtacttctatggcatgaaagt |
35985767 |
T |
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| Q |
201 |
cgcatggatgcttgatggtacaacatcagt-aaaaaagatcccatttaatgacata |
255 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35985768 |
cgcatggatgcttgatggtacaacatcagtaaaaaaagatcccatttaatgacata |
35985823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 36006976 - 36007231
Alignment:
| Q |
1 |
gttggagaagaaaggtcaattttaaatcattataattgatatcatatgtacttatatgacatgaaagacgcatggatatctaatggtacaacctccgatt |
100 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
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| T |
36006976 |
gttggagaagaaaggtcaatttcaaatccttataattgatatcatatgtacttatatgaaatgaaagacgcatcgatatttaatggtacaacctccgatt |
36007075 |
T |
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| Q |
101 |
ccacttaacagaaaaaagattagtgtgtttgttgtcattcaataagaaaaagatgctcatataatgatcccatttaaatgtacttctatggcatgaaagt |
200 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36007076 |
ccacttaactgaaaaaatattagtgtgtttgttgtcattcaataagaaaaagatgctcatataatgatcccatttaaatgtacttctatggcatgaaagt |
36007175 |
T |
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| Q |
201 |
cgcatggatgcttgatggtacaacatcagt-aaaaaagatcccatttaatgacata |
255 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36007176 |
cgcatggatgcttgatggtacaacatcagtaaaaaaagatcccatttaatgacata |
36007231 |
T |
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