View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_high_7 (Length: 428)
Name: NF17580_high_7
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 3831603 - 3831857
Alignment:
| Q |
1 |
ccaatgctaattgtggtcccttctttcacttagtttgcatggtccaatatgctaattgttttcataatggggtatttgattcactctttctttcactttt |
100 |
Q |
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| T |
3831603 |
ccaatgctaattgtggtcccttctttcacttagtttgcatggtccaatatgctaattgttttcataatggggtatttgattcactctttctttcactttt |
3831702 |
T |
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| Q |
101 |
tccttgtttttcttcccttgcttaggatcctggaattcgaattaactatgtatgtatacatgtcaatgtgggcaacactaagtttgacttgtagaaaaga |
200 |
Q |
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| T |
3831703 |
tccttgtttttcttcccttgcttaggatcctggaattcgaattaactatgtatgtatacatgtcaatgtgggcaacactaagtttgacttgtagaaaaga |
3831802 |
T |
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| Q |
201 |
aaggttatttaaacttattttattcttagtttccaatgagattttgaaatagtcc |
255 |
Q |
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| T |
3831803 |
aatggtatttaaacttattttattcttagtttccaatgagattttgaaatagtcc |
3831857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 327 - 424
Target Start/End: Original strand, 3831930 - 3832027
Alignment:
| Q |
327 |
tacgtttttattttattatcctgtactatacaatatgaaaagtttaggaaaagttgacatttgctaatattcataaattaacatagtataatctaccc |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
3831930 |
tacgtttttattttattatcctgtactatacaatatgaaaagtttaggaaaagttgacatttgcaaatattcataaattaacatagcataatttaccc |
3832027 |
T |
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