View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17580_high_8 (Length: 376)

Name: NF17580_high_8
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17580_high_8
NF17580_high_8
[»] chr2 (17 HSPs)
chr2 (9-359)||(44615456-44615807)
chr2 (9-168)||(44624829-44624988)
chr2 (38-268)||(39153135-39153356)
chr2 (15-156)||(39205730-39205871)
chr2 (9-259)||(39216704-39216945)
chr2 (14-144)||(39387494-39387624)
chr2 (9-142)||(39371164-39371297)
chr2 (38-147)||(39472761-39472870)
chr2 (14-225)||(39412957-39413159)
chr2 (14-144)||(39196510-39196640)
chr2 (39-147)||(39138723-39138828)
chr2 (237-291)||(44749549-44749603)
chr2 (41-118)||(44895133-44895210)
chr2 (21-242)||(39396563-39396775)
chr2 (41-94)||(39188804-39188857)
chr2 (15-144)||(39223764-39223893)
chr2 (38-142)||(39380496-39380600)
[»] chr8 (3 HSPs)
chr8 (9-258)||(44730162-44730402)
chr8 (9-258)||(44949787-44950030)
chr8 (9-147)||(45343012-45343150)
[»] scaffold0283 (1 HSPs)
scaffold0283 (9-258)||(5767-6010)
[»] chr5 (2 HSPs)
chr5 (14-168)||(17060698-17060852)
chr5 (14-144)||(33562341-33562471)
[»] chr7 (1 HSPs)
chr7 (20-147)||(19808961-19809085)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 44615456 - 44615807
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615456 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 44615555  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44615556 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttatgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 44615655  T
Q  209 accctgggttttgcaaataaagtctctcgtatgttgatttagaaattctttag-----tcggtcaccaatatttctcttattgtctctatgcttatgtta 303  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  44615656 acactgggttttgcaaataaagtctctggtatgttgatttagaaattctttagtcggttcggtcaccaatatttctcttattgtctctatgcttatgtta 44615755  T
Q  304 catcatatatataatcatgtcttgtaagattaataagatactagatgtaggtaact 359  Q
    ||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615756 catc----atataatcatgtcttgtaagattaataagatactagatgtaggtaact 44615807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 44624829 - 44624988
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |||||    
T  44624829 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgat 44624928  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgc 168  Q
    ||| ||||||  || ||| |||||||||||||||||||  ||| ||||||  ||||||||    
T  44624929 ttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgc 44624988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 268
Target Start/End: Original strand, 39153135 - 39153356
Alignment:
Q  38 ttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaag 137  Q
    ||||||||||| || ||||||||||| ||||||||||||| || |||||| |||||| || |||| |||||||| |||||||||| ||  || ||| |||    
T  39153135 ttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatggattggttacttctttcgataaag 39153234  T
Q  138 atgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccctgggttttgcaaataaagtctctcg 237  Q
    ||||||||||  || ||||||| | |||         |||| || ||||||  |||||| | || | | ||||||||||||||||||||||||| ||| |    
T  39153235 atgaagtcttggagctttttgcatttgt---------tgctcaacacaagactgctgtggaactatttcggaccctgggttttgcaaataaagtttctgg 39153325  T
Q  238 tatgttgatttagaaattctttagtcggtca 268  Q
    |||||| ||||||| || |||| ||| ||||    
T  39153326 tatgttaatttagacatgctttggtcagtca 39153356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 39205871 - 39205730
Alignment:
Q  15 aagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacgg 114  Q
    |||| ||||||||||| | ||| ||||||||||| |||||||||||||| ||||||||| ||| || |||||| |||||| || |||| ||||||||       
T  39205871 aagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataa 39205772  T
Q  115 attggttaattactttgatgaagatgaagtcttcaagatttt 156  Q
    |||| || |||  |||||| |||||||||| ||| |||||||    
T  39205771 attgcttgattcttttgataaagatgaagttttcgagatttt 39205730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 39216704 - 39216945
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||| ||||| ||||||||||| | ||| |||||| |||||||||  ||||||||  |||||||||||| || ||| || |||||  || |||| || ||    
T  39216704 gagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaat 39216803  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    ||| |||||||||| ||  |||| |||||||||||| ||  || ||||||| |||||||| || ||        ||||||||||| |  | |||| |  |    
T  39216804 ttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgc-tcagc--------acaagatagctattgaactgtttgag 39216894  T
Q  209 accctgggttttgcaaataaagtctctcgtatgttgatttagaaattcttt 259  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||| ||||    
T  39216895 accctgggttttgcaaataaagtttctggtatgttaatttagaaatgcttt 39216945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 39387624 - 39387494
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| |||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||  | |||||| |||||  || |||| || ||||| |    
T  39387624 gaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatg 39387525  T
Q  114 gattggttaattactttgatgaagatgaagt 144  Q
    |  || || |||| ||||| |||||||||||    
T  39387524 ggctgcttgattattttgacgaagatgaagt 39387494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 39371164 - 39371297
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||   |||  ||||||| ||||||||||||||||   ||||| |||||| || |||||| ||||||||| |||| || |     
T  39371164 gagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaa 39371263  T
Q  109 ttacggattggttaattactttgatgaagatgaa 142  Q
    ||| |||||||||| ||  |||||||||||||||    
T  39371264 ttatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 39472870 - 39472761
Alignment:
Q  38 ttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaag 137  Q
    ||||||| |||||||||||||||||| |||||||||||||  | |||||| |||||| || |||| || ||||| | |||| ||| ||  ||||||||||    
T  39472870 ttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaag 39472771  T
Q  138 atgaagtctt 147  Q
    ||||||||||    
T  39472770 atgaagtctt 39472761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 39413159 - 39412957
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| |||||||||||   ||| |||||||||||| ||||||||||||||||||| ||||||| || |||| | ||||| ||| |||| ||  |||  |    
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  114 gattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccct 213  Q
    ||||||||| ||  || |||||||||||| ||||  || ||||||| | |||         |||| || |||||||||||| |||||||| | | |||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgt---------tgctcaacacaagatagctgcgaagctgtttggaaccct 39412969  T
Q  214 gggttttgcaaa 225  Q
    ||||||||||||    
T  39412968 gggttttgcaaa 39412957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 39196640 - 39196510
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| ||||||||||| | ||| ||||||||||||||||| || ||||| ||||||||||||| || |||||| |||||  || |||| || |||||      
T  39196640 gaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttata 39196541  T
Q  114 gattggttaattactttgatgaagatgaagt 144  Q
     |||| || |||  |||||||||||||||||    
T  39196540 aattgcttgattcttttgatgaagatgaagt 39196510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 39138723 - 39138828
Alignment:
Q  39 tgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaaga 138  Q
    |||||||||||||||||   ||||| ||||||||| ||| || ||| || |||||| ||||||| ||  |||| | |||| ||| ||| |||||||||||    
T  39138723 tgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaaga 39138819  T
Q  139 tgaagtctt 147  Q
    |||||||||    
T  39138820 tgaagtctt 39138828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 44749603 - 44749549
Alignment:
Q  237 gtatgttgatttagaaattctttagtcggtcaccaatatttctcttattgtctct 291  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||| | ||||||||    
T  44749603 gtatgttgatttagaaattctttagtcagtcaccagtatctctccttttgtctct 44749549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 44895210 - 44895133
Alignment:
Q  41 aaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattg 118  Q
    ||||||||||| |||| |||||| ||||||||||||| || |||||| |||||| || |||| || ||||| ||||||    
T  44895210 aaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattg 44895133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 39396775 - 39396563
Alignment:
Q  21 tgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggt 120  Q
    ||||||||||   ||| |||| |||| |||| | ||||||||| ||||||||||||| || |||||| ||| | ||| |||| || ||||| |||||| |    
T  39396775 tgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatggattgct 39396676  T
Q  121 taattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccctgggtttt 220  Q
    || ||  || |||||||||||||| ||  || ||||||| || ||||| || ||        |||||| |||| || |||||| |  |||||||||||||    
T  39396675 tacttctttcgatgaagatgaagttttggagctttttgcatcggttgc-tcagc--------acaagacagctatggagctgtttgagaccctgggtttt 39396585  T
Q  221 gcaaataaagtctctcgtatgt 242  Q
    ||||||||||| ||| ||||||    
T  39396584 gcaaataaagtttctggtatgt 39396563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 39188857 - 39188804
Alignment:
Q  41 aaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttcta 94  Q
    ||||||||||||||||||||||  | ||||||||||| || |||||| ||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttcta 39188804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 39223764 - 39223893
Alignment:
Q  15 aagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacgg 114  Q
    |||| ||||||||||| | ||| || ||||  ||||||||||| ||||| ||||| ||||||| || |||||| |||||  || |||| || |||||       
T  39223764 aagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataa 39223863  T
Q  115 attggttaattactttgatgaagatgaagt 144  Q
    |||| || |||  |||||||||||||||||    
T  39223864 attgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 39380600 - 39380496
Alignment:
Q  38 ttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaag 137  Q
    ||||||||| |||| | ||| ||||| ||| ||||| ||| || ||||||||||||| || |||| || ||||| |||||| ||| ||  || |||||||    
T  39380600 ttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttatggattgcttacttctttcgatgaag 39380501  T
Q  138 atgaa 142  Q
    |||||    
T  39380500 atgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 44730162 - 44730402
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||   |||||||||||||||||| ||||||||||| |||||||||| ||||| ||| |||||||||||||||||  ||||    
T  44730162 gagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgat 44730261  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    |||  ||||| ||| ||||||||||| |||||||||||   || |||  || |||||         || |||| |||||||||||| |||  ||| ||||    
T  44730262 ttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgt---------tgttgaacacaagatagctgcgaatgtgtttagg 44730352  T
Q  209 accctgggttttgcaaataaagtctctcgtatgttgatttagaaattctt 258  Q
    ||||||  |||||  |||||||||||||||| ||||||| ||||||||||    
T  44730353 accctgcattttgtgaataaagtctctcgtaagttgattaagaaattctt 44730402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 44950030 - 44949787
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||   ||||||||||  ||| || |||||||||||  ||||||||||||||| |||  |||||||||||||| || ||||    
T  44950030 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 44949931  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    ||| |||||| ||| ||||||||||  |||||| ||||  ||| ||| ||| |||||         ||||||| |||| |||||||||||| ||| ||||    
T  44949930 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgt---------tgctgaacacaatatagctgtgaaggtgtttagg 44949840  T
Q  209 accctgggttttgcaaataaagtctctcgta---tgttgatttagaaattctt 258  Q
    ||||||| ||||| ||||| |||||||||||   |||||||| ||||||||||    
T  44949839 accctggattttgtaaatatagtctctcgtaagttgttgattcagaaattctt 44949787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 45343012 - 45343150
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||| ||||| || ||||||||   |||||||||||||||| |||||| |||||| ||||| || ||| | | |||||| |||||| ||||||| || ||    
T  45343012 gagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaat 45343111  T
Q  109 ttacggattggttaattactttgatgaagatgaagtctt 147  Q
    | | | |||| ||| ||  |||||| |||||||||||||    
T  45343112 tcatgtattgcttacttcttttgataaagatgaagtctt 45343150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 6010 - 5767
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||   ||||||||||  ||| || |||||||||||  ||||||||||||||| |||  |||||||||||||| || ||||    
T  6010 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 5911  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    ||| |||||| ||| ||||||||||  |||||| ||||  ||| ||| ||| |||||         ||||||| |||| |||||||||||| ||| ||||    
T  5910 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgt---------tgctgaacacaatatagctgtgaaggtgtttagg 5820  T
Q  209 accctgggttttgcaaataaagtctctcgta---tgttgatttagaaattctt 258  Q
    ||||||| ||||| ||||| |||||||||||   |||||||| ||||||||||    
T  5819 accctggattttgtaaatatagtctctcgtaagttgttgattcagaaattctt 5767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 17060698 - 17060852
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| |||||||||||   |||||||||||||||||| |||| |||||| ||| |||| ||||||| ||| |||||||| ||||| || ||| |||| |    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  114 gattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgc 168  Q
    ||||| ||| ||| |||||| |||||||||||||  |  ||||||| ||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgc 17060852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 33562341 - 33562471
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| ||||||||||| | ||| |||||||||||||||||||||||||| |||  || ||||| || |||||| |||||  || |||| || |||||      
T  33562341 gaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttata 33562440  T
Q  114 gattggttaattactttgatgaagatgaagt 144  Q
     |||| || |||  |||||||||||||||||    
T  33562441 aattgcttgattcttttgatgaagatgaagt 33562471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 19808961 - 19809085
Alignment:
Q  20 ttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattgg 119  Q
    |||||||||||   ||| ||||||||||||||||||   | ||| ||||||||| ||| || |||||| |||||| || |||| ||  |||| | ||||     
T  19808961 ttgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgc 19809057  T
Q  120 ttaattactttgatgaagatgaagtctt 147  Q
    ||| ||| ||||||||||||||||||||    
T  19809058 ttacttattttgatgaagatgaagtctt 19809085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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