View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_low_1 (Length: 647)
Name: NF17580_low_1
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 134 - 396
Target Start/End: Original strand, 29287105 - 29287370
Alignment:
| Q |
134 |
tagagaatctaaattgaacaagggacaaatttaagctactgcatttaagtttgaaaattttcataaaattaagtattgtttcatatatgaactttgataa |
233 |
Q |
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| T |
29287105 |
tagagaatctaaattgaacaagggacaaatttaagctactgcatttaagtttgaaaattttcataaaattaaatattgtttcatatatgaactttgataa |
29287204 |
T |
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| Q |
234 |
cacattgcacatgccataaacacgatt-gggtgacccatttgatgatattgatctttgaccagtaggatttggatcatttgctcccctcctacattcctt |
332 |
Q |
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| T |
29287205 |
cacattgcacatgccataaacacgattggggtgacccatttgatgatactgatctttgattagtaggatttggattatttgctcccctcctacactcctt |
29287304 |
T |
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| Q |
333 |
gcatattttatg--tctatctatctcatcatcgtctcttcattttttccgtcacattcacaaaacc |
396 |
Q |
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| T |
29287305 |
gcatattttatgtctctatctatctcatcatcgtctcttcattttttccatcacattcacaaaacc |
29287370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 390 - 612
Target Start/End: Original strand, 29287403 - 29287623
Alignment:
| Q |
390 |
caaaaccctagttgataatttagctatgatctcatcactatttcggctgaacttaatcaattcccctaaattgtcgaattcagctgacaccctagctaaa |
489 |
Q |
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| T |
29287403 |
caaatccctagttgataatttagctatgatctcatcactatttcggctgaacttaatcaat-cccctaaat-gtcgaattcagcagacaccctagctaaa |
29287500 |
T |
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| Q |
490 |
taacaatatgttatatcatgttttgcaacacatgtgtttcctgtggtttttgtatctaggtttcatcttggatcaaatgaaacgacaattgcatgtgcat |
589 |
Q |
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| T |
29287501 |
taacaatatgttatatcatgttttgcaagacatgtgtttcctgtggtttttgtatctaggtttcatcttggatcaaatgaaacgacaattacatgtgcat |
29287600 |
T |
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| Q |
590 |
ggcattagtatcgatggttagta |
612 |
Q |
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| T |
29287601 |
ggcattagtatcgatggttagta |
29287623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29284730 - 29284859
Alignment:
| Q |
4 |
tcgcatgtccaagaatataatcaagcacctggaaataatggacaagtctattttcttagtcaaaatgtgcacgagaggctagtaaatgagaaaaggtgta |
103 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29284730 |
tcgcatatccaataatataatcaagcacctggaaataatggacatgtctattttcttagtcaaaatgtgcacgagaggctagtaaatgagaaaaggggta |
29284829 |
T |
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| Q |
104 |
aaaataaggtttaaatcgcacaattgcaac |
133 |
Q |
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| T |
29284830 |
aaaataaggtttaaatcgcacaattgcaac |
29284859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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