View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_low_12 (Length: 353)
Name: NF17580_low_12
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 32936624 - 32936286
Alignment:
| Q |
18 |
aatgagcttgaatctaactctcaaaagttaactcataaaatgatggtgtccgaagcatatatata----catccaaccttacaatgtaacctcgatacaa |
113 |
Q |
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| T |
32936624 |
aatgagcttgaatctaactctcagaagttaactcattaaatgatggtgtccgaagcatatatatatatacatccaaccttacaatgtaacctcgatacaa |
32936525 |
T |
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| Q |
114 |
cttcaatcgatataagataaagaattaacctaatattgatagcgttctccatttgaaaaacatgcctaacaaataagccagcatgatcccaattgtaact |
213 |
Q |
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| T |
32936524 |
cttcaatcgatataagataaagaattaacctaatattgatagcgttctccatttgaaaaacatgcctaacaaataagccagcatgatcccaattgtaact |
32936425 |
T |
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| Q |
214 |
gatagctacaagaaaacaacataaaaaatattcgtatcaaattaatgagaataataataaaaatgaacgcatgtgatgtaattctctgtttcaaagcaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32936424 |
gatagctacaagaaaacaacataaaaaatattcgtatcaaattaatgagaataataataaaaatgaacgcatgtgatgtaattctctgtttcaaagcaac |
32936325 |
T |
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| Q |
314 |
ataaagccaacctggttcacagatcctatgctactcctc |
352 |
Q |
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||||| |||||||||||||||||||||| ||||| |||| |
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| T |
32936324 |
ataaaaccaacctggttcacagatcctaggctacccctc |
32936286 |
T |
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