View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_low_16 (Length: 314)
Name: NF17580_low_16
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 1104236 - 1103934
Alignment:
| Q |
1 |
caaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgacaatttgagtaaca |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1104236 |
caaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttgtttcgacaatttgagtaaca |
1104137 |
T |
|
| Q |
101 |
gtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104136 |
gtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactacgaa |
1104037 |
T |
|
| Q |
201 |
ggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaagctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104036 |
ggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaagctt |
1103937 |
T |
|
| Q |
301 |
cat |
303 |
Q |
| |
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||| |
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| T |
1103936 |
cat |
1103934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 1087683 - 1087378
Alignment:
| Q |
1 |
caaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgt---ttcgacaatttgagta |
97 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||| | |||| | | |||||| |||| |
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| T |
1087683 |
caaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaattgaagta |
1087584 |
T |
|
| Q |
98 |
acagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactac |
197 |
Q |
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||| || || | |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1087583 |
acaatctccacaggtgctccactaaatccaactccattccaagggccagttctatgaatctcaactgatccttttttcaatacaacttctggattactac |
1087484 |
T |
|
| Q |
198 |
gaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaag |
297 |
Q |
| |
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|||||||||| ||||||| |||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1087483 |
taaggacaataccccaagttaaatctcccgaagatggatcgtcccaacttttccatgaagttaattgacgattaagaccggtttttaggtcccatccaag |
1087384 |
T |
|
| Q |
298 |
cttcat |
303 |
Q |
| |
|
|||||| |
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|
| T |
1087383 |
cttcat |
1087378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 1047209 - 1046904
Alignment:
| Q |
1 |
caaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgacaat--ttga-gta |
97 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||| |||||||||| | ||| | |||| |||| ||| |
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|
| T |
1047209 |
caaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaacaacaacagttgatgta |
1047110 |
T |
|
| Q |
98 |
acagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactac |
197 |
Q |
| |
|
||| || || || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
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| T |
1047109 |
acaatctccataggcgctccactaaatccaactccattccaaggaccactcctatgaatttcaactgatcctcttttcaaaacaatttctggattactac |
1047010 |
T |
|
| Q |
198 |
gaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaag |
297 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
1047009 |
gaaggacaataccccaagttaaatctcccgaagatggatcgtcccaatttttccaagaagttaatggacgattaagaccaatttttaggtcccatccaag |
1046910 |
T |
|
| Q |
298 |
cttcat |
303 |
Q |
| |
|
|||||| |
|
|
| T |
1046909 |
cttcat |
1046904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 1072022 - 1071717
Alignment:
| Q |
1 |
caaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaagtttgtttcgacaat--ttga-gta |
97 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||| ||||| |||| | | || |||| ||| |
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| T |
1072022 |
caaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtagctataacacttgacgta |
1071923 |
T |
|
| Q |
98 |
acagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatgaatctcaactgatccttttttcaatacaatttctggattactac |
197 |
Q |
| |
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| | || || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1071922 |
ataatctccataggtgctccactaaatccaactccattccaaggaccactcctgtgaatttcaactgatccttttttcaatacaatttctggattactat |
1071823 |
T |
|
| Q |
198 |
gaaggacaatagcccaagtaaaatctcccgaagacggatcatcccaatttttccaagaagttaattgacgattaagaccggtttttaggtcccatccaag |
297 |
Q |
| |
|
||||||||||| |||| || ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
1071822 |
gaaggacaataccccatgttaaatctcccgatgatggatcgtcccaatttttccaagaagttaattgacgattaagaccggtttttaagtcccatccatg |
1071723 |
T |
|
| Q |
298 |
cttcat |
303 |
Q |
| |
|
|||||| |
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|
| T |
1071722 |
cttcat |
1071717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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