View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_low_2 (Length: 618)
Name: NF17580_low_2
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 536
Target Start/End: Original strand, 1830367 - 1830903
Alignment:
| Q |
11 |
aagaatatttagcttttggtgcactaatataataattttggtccatatattaggttcattaatataccaatgagagtatttaaatagaatacacataact |
110 |
Q |
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| T |
1830367 |
aagaatatttagcttttggtgcactaatataataattttggtccatatattaggttcattaatataccaatgagagtatttaaatagaatacacataact |
1830466 |
T |
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| Q |
111 |
gttgcattatgtgttgattctatgatacgcataatcttatggctaggtagttaggcctctgt---------------cttcaactagatcagtgtctcct |
195 |
Q |
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| T |
1830467 |
gttgcattatgtgttgattctatgatacgcataatcttatggctaggtagttaggcctctgtttgcatgggtcgtgtcttcaactagatcagtgtctcct |
1830566 |
T |
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| Q |
196 |
ccattacaactccaccccaactttgctcttgcatctttgtcttcaaatctcttcttctcaatctctacgatcaaaaccaaactcaccgatttgagcaatt |
295 |
Q |
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| T |
1830567 |
ccattacaactccaccccacctttgctcttgcatctttgacttcaaatctcttcttctcaatctctacgatcaaaaccaaactcaccgatttgagcaatt |
1830666 |
T |
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| Q |
296 |
gcaccggaaacctgtccccgaatgagtaatccaatggttggctgggagaccnnnnnnnttatatgaaagagcgctccaaggttctatctacggaaaaact |
395 |
Q |
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| T |
1830667 |
gcaccggaaacctgtccccaaatgagtaatccaatggttggctcggagaccaaaaaaattatatgaaagagcgctccagggttctatctacggaaaacct |
1830766 |
T |
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| Q |
396 |
gtcagttttcttggtctaaaaggtccatataatcaacgtgcttgaaaaaactattccttacaacagaagtatagaacatttccatctttacctttactta |
495 |
Q |
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| T |
1830767 |
gtcagttttcttggtctaaaaggtccatataatcaacgtgcttgaagaaactattccttacaacagaagtatagaacatttccatctttacctttactta |
1830866 |
T |
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| Q |
496 |
atatatcttaaataacaaacaaccaggatacatgcaagcaa |
536 |
Q |
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| T |
1830867 |
atatatcttaaat----aacaactaggatacatgcaagcaa |
1830903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 1814787 - 1814899
Alignment:
| Q |
56 |
tatattaggttcattaatataccaatgagagtatttaaatagaatacacataactgttgcattatgtgttgattctatgatacgcataatcttatggcta |
155 |
Q |
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| T |
1814787 |
tatatttggttcatcaatagaccgatgagagtattcaaatagaatatatagaactgttgcattatgtgttgattctatgatattcataatcttatagcta |
1814886 |
T |
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| Q |
156 |
ggtagttaggcct |
168 |
Q |
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| T |
1814887 |
ggtagttaggcct |
1814899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 586
Target Start/End: Original strand, 1830993 - 1831036
Alignment:
| Q |
543 |
acttataaaataatgaaatgaaaatgcattttgtcacatcccaa |
586 |
Q |
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| T |
1830993 |
acttataaaataatgaaatggaagtgcattttgtaacatcccaa |
1831036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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