View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_low_24 (Length: 220)
Name: NF17580_low_24
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 33902181 - 33902347
Alignment:
| Q |
3 |
aatatcacacaagatgaacaaaataactcatcatggccagaagcaaaagaatttgtgtctattgcaggacatggagtgaaagcaattgttcaaaacaagg |
102 |
Q |
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| T |
33902181 |
aatatcacacaagatgaacaaaataacccatcatggccacaagcaaaagaatttgtgtctattgcaggacatggagtgaaagcaattgttcaaaacaagg |
33902280 |
T |
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| Q |
103 |
aaataatggttggaaataaaaaactgatgttagatcataacatagctatttcggtggaagctgaaga |
169 |
Q |
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| T |
33902281 |
aaataatggttggaaataaaaaactgatgttagatcataacatagctatttcagtggaagctgaaga |
33902347 |
T |
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Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 33919336 - 33919427
Alignment:
| Q |
78 |
gtgaaagcaattgttcaaaacaaggaaataatggttggaaataaaaaactgatgttagatcataacatagctatttcggtggaagctgaaga |
169 |
Q |
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| T |
33919336 |
gtgaaggcaattgttcaaaacaaggaaataatggttggaaataaaaaactgatgttagatcataacatagctatttcagtggaagctgaaga |
33919427 |
T |
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