View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_low_25 (Length: 219)
Name: NF17580_low_25
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 1815460 - 1815570
Alignment:
| Q |
92 |
atgatgattcatgaagcaagtagtg-actctcctctacatttatgtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatag |
190 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1815460 |
atgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatag |
1815559 |
T |
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| Q |
191 |
ccacttccttc |
201 |
Q |
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||||||||||| |
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| T |
1815560 |
ccacttccttc |
1815570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 1869181 - 1869072
Alignment:
| Q |
92 |
atgatgattcatgaagcaagtagtgactctcctctacatttatgtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagc |
191 |
Q |
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|||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1869181 |
atgatgattcatgaagcaagaaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagc |
1869082 |
T |
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| Q |
192 |
cacttccttc |
201 |
Q |
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|||||||||| |
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| T |
1869081 |
cacttccttc |
1869072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 1843572 - 1843463
Alignment:
| Q |
92 |
atgatgattcatgaagcaagtagtgactctcctctacatttatgtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagc |
191 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1843572 |
atgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaacctcattccctccaattccatagc |
1843473 |
T |
|
| Q |
192 |
cacttccttc |
201 |
Q |
| |
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|||||||||| |
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|
| T |
1843472 |
cacttccttc |
1843463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 1857583 - 1857474
Alignment:
| Q |
92 |
atgatgattcatgaagcaagtagtgactctcctctacatttatgtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagc |
191 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1857583 |
atgatgattcatgaagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaacctcattccctccaattccatagc |
1857484 |
T |
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| Q |
192 |
cacttccttc |
201 |
Q |
| |
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|||||||||| |
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|
| T |
1857483 |
cacttccttc |
1857474 |
T |
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