View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17580_low_3 (Length: 598)
Name: NF17580_low_3
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 12 - 598
Target Start/End: Original strand, 42460562 - 42461148
Alignment:
| Q |
12 |
atgaaaataagccgttgcatttccctccacacgttctcattgccttatctccaagctactactcttcannnnnnnnnnnnnnnnnnaacactccaaatta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42460562 |
atgaaaataagccgttgcatttccctccacacgttctcattgccttatctccaagctactactcttcatttttttccattttttttaacactccaaatta |
42460661 |
T |
|
| Q |
112 |
aacaaaaccactactctcaaattttctcagttacactgccaccattcatcatgttcactgctaccaaagtagccttcactttagcaccccctcgtccatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42460662 |
aacaaaaccactactctcaaattttctcagttacactgccaccattcatcatgttcactgctaccaaagtagccttcactttagcaccccctcgtccatg |
42460761 |
T |
|
| Q |
212 |
ttctgcacccccaacacccttcattccattctctttttcttctgtttctcctcgtcaccttaattcccgctccttatgccttcgccgcagattattccta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42460762 |
ttctgcacccccaacacccttcattccattctctttttcttctgtttctcctcctcaccttaattcccgccacttatgccttcgccgcagattattccta |
42460861 |
T |
|
| Q |
312 |
ctttcacctacagccccggcagatcaacaaggtcttactttaatcactttttcattttattttgtgtgtaatttggatattattgctgcgcatctgtaga |
411 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| ||| |
|
|
| T |
42460862 |
ctttcacctaaagccactgcagatcaacaaggtcttactttaatcaccttttcattttattttgcgtgtaatttggatattatcgctgcgcatctgcaga |
42460961 |
T |
|
| Q |
412 |
gactaattgttacttgttttatttttctttcagggaatgttggagattttgacggagatgctgttatcgataccaatgtcctcccatattgtagcataga |
511 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42460962 |
gactaattattacttgttttatttttctttcagggaatgttggagattttgacggagatgctgttattgataccaatgtcctcccatattgtagcataga |
42461061 |
T |
|
| Q |
512 |
tcnnnnnnnggagaagaaatccgttggtgaactcgagcaagaatttcttcaagcactccaagtatatatcccaccaaattagtttct |
598 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42461062 |
tcaaaaaaaggagaagaaatccgttggtgaactcgagcaagaatttcttcaagcactccaagtatatatcccaccaaattagtttct |
42461148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 522 - 577
Target Start/End: Complemental strand, 3188976 - 3188921
Alignment:
| Q |
522 |
gagaagaaatccgttggtgaactcgagcaagaatttcttcaagcactccaagtata |
577 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
3188976 |
gagaagaaatcacttggtgaacttgagcaagattttcttcaagcacttcaagtata |
3188921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University