View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_low_4 (Length: 580)
Name: NF17580_low_4
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 16 - 566
Target Start/End: Complemental strand, 1720810 - 1720262
Alignment:
| Q |
16 |
atgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaag |
115 |
Q |
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| T |
1720810 |
atgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaag |
1720711 |
T |
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| Q |
116 |
acggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcccaatagaatccatacgcgtcctcaca |
215 |
Q |
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| T |
1720710 |
acggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattcccaatagaatccatacgcgtcctcaca |
1720611 |
T |
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| Q |
216 |
ggtatctgcgtttgaaannnnnnncatacaatgataatttgatgcatgtattcggttaatgtttatttatttatttcatgctttctgtttgttttaatta |
315 |
Q |
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| T |
1720610 |
ggtatctgctattgaaatttttttcatacaatgataatttgatgcatgtattcggttaatgtttatttatttatttcatgctttctgtttgttttaatta |
1720511 |
T |
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| Q |
316 |
atgaataacaaaagaaagaatttaaagctgcttctgaactacaatgtgataattcatactactagaatatgtcatagaagatggatattaagttgtcaat |
415 |
Q |
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| T |
1720510 |
atgaataacataagaaagaatttaaagctgcttctgaactacaatgtgataattcatactactagaatatgtcatagaagatggatattaagtagtcaat |
1720411 |
T |
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| Q |
416 |
tctttgatatcaagttatatttcatcatatcttcaatttctcatgtgtgataaagatacatagaaagtgctagaaacaaatgttatagtaaacatggcat |
515 |
Q |
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| T |
1720410 |
tctttgatatcaagttatatttcatcatatcttcaatttttcatgtgtgataaagatacatagaaagtgctagaaacaaatgt--tagtaaacatggcat |
1720313 |
T |
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| Q |
516 |
caattagaaacatggtannnnnnnaaatatgaattagtaacatgctataat |
566 |
Q |
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| T |
1720312 |
caattagaaacatggtatttttttaaatatgaattagtaacatgctataat |
1720262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 18372753 - 18372915
Alignment:
| Q |
26 |
aaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatg |
125 |
Q |
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| T |
18372753 |
aaatgcatcaggccattcctcgtcgttgttgtctacaacaatcacccgtaacaagcacatggttctatgtggagtaacttgcag-cgaagatgttacaag |
18372851 |
T |
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| Q |
126 |
ctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataattttgcattccc |
190 |
Q |
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| T |
18372852 |
ctcaa-ggaaccattaatgatgtcgttaacatggaaaatctaacggttaacaattttgcattccc |
18372915 |
T |
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