View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_low_5 (Length: 519)
Name: NF17580_low_5
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 42006442 - 42006771
Alignment:
| Q |
19 |
ttaactacaaccatgctagcaacaacataatgatgaagttttcttttaatctctgtgcatgggttcataggcatgacaaaaccatcatcatgtacaagtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006442 |
ttaactacaaccatgctagcaacaacataatgatgaagttttcttttaatctctgtgcatgggttcataggcatgacaaaaccatcatcatgtacaagtt |
42006541 |
T |
|
| Q |
119 |
tattcctccaaaaccataatgtgtagcatgctgttgcccaaaagctcatccaagccgaattctccctttcatccattgccaaagtcattttaagatctat |
218 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006542 |
tattcctccaaaacgataacgtgtagcatgctgttgcccaaaagctcatccaagccgaattctccctttcatccattgccaaagtcattttaagatctat |
42006641 |
T |
|
| Q |
219 |
ccactgttgcccaaa---attattttcttaaagatcgatttgtatatcctgtaaaatgaatgaaagtaaatatatttatttttgaaatcttttcttgaga |
315 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006642 |
ccactgttgcccaaaattattattttcttaaagatcgatttg--tatcctgtaaaatgaatgaaagtaaatatatttatttttgaaatcttttcttgaga |
42006739 |
T |
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| Q |
316 |
aatgtttatgctaaactagaatctctctttat |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
42006740 |
aatgtttatgctaaactagaatctctctttat |
42006771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 335 - 507
Target Start/End: Original strand, 42006923 - 42007095
Alignment:
| Q |
335 |
aatctctctttatcaagtcaaaagaatggacgaaacatataatcacaatgtatatacatttctcaaaagaaatggagaacataattgatattgatcaggg |
434 |
Q |
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| T |
42006923 |
aatctctctttatcaagtcaaaagaatggacgaaacatataatcacaatgtatatacatttctcaaaataaatggagaacataattgatattgatcaggg |
42007022 |
T |
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| Q |
435 |
agatagttgatagtgcagatatcaccaatatcctactcacatctatctttctcataaactgtattattatatt |
507 |
Q |
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| T |
42007023 |
agatagttgatagtgcagatatcactaatatcctactcacatctatctttctcataaactgtattattatatt |
42007095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 33819889 - 33820073
Alignment:
| Q |
15 |
agtattaactacaaccatgctagcaacaacat---aatgatgaagttttcttttaatctctgtgcatgggttcataggcatgacaaaaccatcatcatgt |
111 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| ||||||||| ||| |||||||||| ||||||||| |||||||||| ||||||| |||| ||||| |
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| T |
33819889 |
agtattgactacaaccatactagcaacaacatcataatgatgaattttccttttaatctttgtgcatggtttcataggcacgacaaaagtatcaacatgt |
33819988 |
T |
|
| Q |
112 |
acaagtttattcctccaaaaccataatgtgtagcatgctgttgcccaaaagctcatccaagccgaattctccctttcatccattg |
196 |
Q |
| |
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||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
33819989 |
acaagcttattcctccaaaaccataaagagtagcatgctgttgcccaaaagctcatccaatccgaattctccccttcatccattg |
33820073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 43337128 - 43336913
Alignment:
| Q |
15 |
agtattaactacaaccatgctagcaacaacat---aatgatgaagttttcttttaatctctgtgcatgggttcataggcatgacaaaaccatcatcatgt |
111 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
43337128 |
agtattaactacaaccatgttagcaacaacatcataatgatgaattttccttttaatctatgtgcatgggttcataggcatgacaaaagcatcatcatgt |
43337029 |
T |
|
| Q |
112 |
acaagtttattcctccaaaaccataatgtgtagcatgctgttgcccaaaagctcatccaagccgaattctccctttcatccattgccaaagtcattttaa |
211 |
Q |
| |
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||||| ||||| ||||||||||| || | |||| ||| | || | |||| |||||||| |||||||||||| ||| ||||||||| |||||| |||| |
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| T |
43337028 |
acaagcttatttctccaaaaccacaaagagtagtatgttattttcaaaaatatcatccaaaccgaattctccccatcagccattgccatagtcatattaa |
43336929 |
T |
|
| Q |
212 |
gatctatccactgttg |
227 |
Q |
| |
|
||||||||||| |||| |
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| T |
43336928 |
gatctatccaccgttg |
43336913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 48875491 - 48875372
Alignment:
| Q |
104 |
catcatgtacaagtttattcctccaaaaccataatgtgtagcatgctgttgcccaaaagctcatccaagccgaattctccctttcatccattgccaaagt |
203 |
Q |
| |
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||||||| ||||| ||||||||||||||||| |||| |||||||||| | ||||||||||||||||| || | ||||||| ||||||||| |||| | |
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| T |
48875491 |
catcatgcacaagcttattcctccaaaaccacaatgagtagcatgctctctcccaaaagctcatccaatcccatttctccccttcatccatcgccataaa |
48875392 |
T |
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| Q |
204 |
cattttaagatctatccact |
223 |
Q |
| |
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||| ||||||||||| |||| |
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| T |
48875391 |
catgttaagatctatacact |
48875372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 16541948 - 16541751
Alignment:
| Q |
15 |
agtattaactacaaccatgctagcaacaacat---aatgatgaagttttcttttaatctctgtgcatgggttcataggcatgacaaaaccatcatcatgt |
111 |
Q |
| |
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|||| ||||||||||||| |||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |||||||||| |
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| T |
16541948 |
agtactaactacaaccatattagcaacaacatcataatgatgaattttccttttaatctatgtgcatgggttcataggcatgacaacagcatcatcatg- |
16541850 |
T |
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| Q |
112 |
acaagtttattcctccaaaaccataatgtgtagcatgctgttgcccaaaagctcatccaagccgaattctccctttcatccattgccaaagtcattttaa |
211 |
Q |
| |
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||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| || |||| |||| |||||||||||||| | |||| |||| |
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| T |
16541849 |
-caaacttattcctccaaaacca----gagtagcatgctgttgcccaaaagctcatccaaaccaaattttccccttcatccattgccataatcatattaa |
16541755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 49076900 - 49077025
Alignment:
| Q |
15 |
agtattaactacaaccatgctagcaacaaca---taatgatgaagttttcttttaatctctgtgcatgggttcataggcatgacaaaaccatcatcatgt |
111 |
Q |
| |
|
||||||||||||||| || |||||||||||| ||||| |||| ||| |||||||||| |||||| ||||||||| ||||||||||| |||||||||| |
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| T |
49076900 |
agtattaactacaac-atactagcaacaacactataatggtgaattttccttttaatctttgtgcacgggttcatatgcatgacaaaagtatcatcatgt |
49076998 |
T |
|
| Q |
112 |
ac-aagtttattcctccaaaaccataa |
137 |
Q |
| |
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|| ||| |||||||||||||||||||| |
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| T |
49076999 |
acaaagcttattcctccaaaaccataa |
49077025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 49077216 - 49077300
Alignment:
| Q |
142 |
tagcatgctgttgcccaaaagctcatccaagccgaattctccctttcatccattgccaaagtcattttaagatctatccactgtt |
226 |
Q |
| |
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||||||| ||||| ||||||| |||| ||| ||||||||| || ||||||||||| |||||| ||||||| ||||||||||| |
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|
| T |
49077216 |
tagcatgttgttgtccaaaagatcattcaatatgaattctcctcttgatccattgccatagtcatattaagatatatccactgtt |
49077300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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