View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17580_low_8 (Length: 376)

Name: NF17580_low_8
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17580_low_8
NF17580_low_8
[»] chr2 (17 HSPs)
chr2 (9-359)||(44615456-44615807)
chr2 (9-168)||(44624829-44624988)
chr2 (38-268)||(39153135-39153356)
chr2 (15-156)||(39205730-39205871)
chr2 (9-259)||(39216704-39216945)
chr2 (14-144)||(39387494-39387624)
chr2 (9-142)||(39371164-39371297)
chr2 (38-147)||(39472761-39472870)
chr2 (14-225)||(39412957-39413159)
chr2 (14-144)||(39196510-39196640)
chr2 (39-147)||(39138723-39138828)
chr2 (237-291)||(44749549-44749603)
chr2 (41-118)||(44895133-44895210)
chr2 (21-242)||(39396563-39396775)
chr2 (41-94)||(39188804-39188857)
chr2 (15-144)||(39223764-39223893)
chr2 (38-142)||(39380496-39380600)
[»] chr8 (3 HSPs)
chr8 (9-258)||(44730162-44730402)
chr8 (9-258)||(44949787-44950030)
chr8 (9-147)||(45343012-45343150)
[»] scaffold0283 (1 HSPs)
scaffold0283 (9-258)||(5767-6010)
[»] chr5 (2 HSPs)
chr5 (14-168)||(17060698-17060852)
chr5 (14-144)||(33562341-33562471)
[»] chr7 (1 HSPs)
chr7 (20-147)||(19808961-19809085)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 44615456 - 44615807
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615456 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 44615555  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44615556 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttatgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 44615655  T
Q  209 accctgggttttgcaaataaagtctctcgtatgttgatttagaaattctttag-----tcggtcaccaatatttctcttattgtctctatgcttatgtta 303  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  44615656 acactgggttttgcaaataaagtctctggtatgttgatttagaaattctttagtcggttcggtcaccaatatttctcttattgtctctatgcttatgtta 44615755  T
Q  304 catcatatatataatcatgtcttgtaagattaataagatactagatgtaggtaact 359  Q
    ||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615756 catc----atataatcatgtcttgtaagattaataagatactagatgtaggtaact 44615807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 44624829 - 44624988
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |||||    
T  44624829 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgat 44624928  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgc 168  Q
    ||| ||||||  || ||| |||||||||||||||||||  ||| ||||||  ||||||||    
T  44624929 ttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgc 44624988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 268
Target Start/End: Original strand, 39153135 - 39153356
Alignment:
Q  38 ttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaag 137  Q
    ||||||||||| || ||||||||||| ||||||||||||| || |||||| |||||| || |||| |||||||| |||||||||| ||  || ||| |||    
T  39153135 ttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatggattggttacttctttcgataaag 39153234  T
Q  138 atgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccctgggttttgcaaataaagtctctcg 237  Q
    ||||||||||  || ||||||| | |||         |||| || ||||||  |||||| | || | | ||||||||||||||||||||||||| ||| |    
T  39153235 atgaagtcttggagctttttgcatttgt---------tgctcaacacaagactgctgtggaactatttcggaccctgggttttgcaaataaagtttctgg 39153325  T
Q  238 tatgttgatttagaaattctttagtcggtca 268  Q
    |||||| ||||||| || |||| ||| ||||    
T  39153326 tatgttaatttagacatgctttggtcagtca 39153356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 39205871 - 39205730
Alignment:
Q  15 aagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacgg 114  Q
    |||| ||||||||||| | ||| ||||||||||| |||||||||||||| ||||||||| ||| || |||||| |||||| || |||| ||||||||       
T  39205871 aagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataa 39205772  T
Q  115 attggttaattactttgatgaagatgaagtcttcaagatttt 156  Q
    |||| || |||  |||||| |||||||||| ||| |||||||    
T  39205771 attgcttgattcttttgataaagatgaagttttcgagatttt 39205730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 39216704 - 39216945
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||| ||||| ||||||||||| | ||| |||||| |||||||||  ||||||||  |||||||||||| || ||| || |||||  || |||| || ||    
T  39216704 gagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaat 39216803  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    ||| |||||||||| ||  |||| |||||||||||| ||  || ||||||| |||||||| || ||        ||||||||||| |  | |||| |  |    
T  39216804 ttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgc-tcagc--------acaagatagctattgaactgtttgag 39216894  T
Q  209 accctgggttttgcaaataaagtctctcgtatgttgatttagaaattcttt 259  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||| ||||    
T  39216895 accctgggttttgcaaataaagtttctggtatgttaatttagaaatgcttt 39216945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 39387624 - 39387494
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| |||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||  | |||||| |||||  || |||| || ||||| |    
T  39387624 gaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatg 39387525  T
Q  114 gattggttaattactttgatgaagatgaagt 144  Q
    |  || || |||| ||||| |||||||||||    
T  39387524 ggctgcttgattattttgacgaagatgaagt 39387494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 39371164 - 39371297
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||   |||  ||||||| ||||||||||||||||   ||||| |||||| || |||||| ||||||||| |||| || |     
T  39371164 gagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaa 39371263  T
Q  109 ttacggattggttaattactttgatgaagatgaa 142  Q
    ||| |||||||||| ||  |||||||||||||||    
T  39371264 ttatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 39472870 - 39472761
Alignment:
Q  38 ttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaag 137  Q
    ||||||| |||||||||||||||||| |||||||||||||  | |||||| |||||| || |||| || ||||| | |||| ||| ||  ||||||||||    
T  39472870 ttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaag 39472771  T
Q  138 atgaagtctt 147  Q
    ||||||||||    
T  39472770 atgaagtctt 39472761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 39413159 - 39412957
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| |||||||||||   ||| |||||||||||| ||||||||||||||||||| ||||||| || |||| | ||||| ||| |||| ||  |||  |    
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  114 gattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccct 213  Q
    ||||||||| ||  || |||||||||||| ||||  || ||||||| | |||         |||| || |||||||||||| |||||||| | | |||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgt---------tgctcaacacaagatagctgcgaagctgtttggaaccct 39412969  T
Q  214 gggttttgcaaa 225  Q
    ||||||||||||    
T  39412968 gggttttgcaaa 39412957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 39196640 - 39196510
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| ||||||||||| | ||| ||||||||||||||||| || ||||| ||||||||||||| || |||||| |||||  || |||| || |||||      
T  39196640 gaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttata 39196541  T
Q  114 gattggttaattactttgatgaagatgaagt 144  Q
     |||| || |||  |||||||||||||||||    
T  39196540 aattgcttgattcttttgatgaagatgaagt 39196510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 39138723 - 39138828
Alignment:
Q  39 tgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaaga 138  Q
    |||||||||||||||||   ||||| ||||||||| ||| || ||| || |||||| ||||||| ||  |||| | |||| ||| ||| |||||||||||    
T  39138723 tgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaaga 39138819  T
Q  139 tgaagtctt 147  Q
    |||||||||    
T  39138820 tgaagtctt 39138828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 44749603 - 44749549
Alignment:
Q  237 gtatgttgatttagaaattctttagtcggtcaccaatatttctcttattgtctct 291  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||| | ||||||||    
T  44749603 gtatgttgatttagaaattctttagtcagtcaccagtatctctccttttgtctct 44749549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 44895210 - 44895133
Alignment:
Q  41 aaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattg 118  Q
    ||||||||||| |||| |||||| ||||||||||||| || |||||| |||||| || |||| || ||||| ||||||    
T  44895210 aaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattg 44895133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 39396775 - 39396563
Alignment:
Q  21 tgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggt 120  Q
    ||||||||||   ||| |||| |||| |||| | ||||||||| ||||||||||||| || |||||| ||| | ||| |||| || ||||| |||||| |    
T  39396775 tgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatttatggattgct 39396676  T
Q  121 taattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggaccctgggtttt 220  Q
    || ||  || |||||||||||||| ||  || ||||||| || ||||| || ||        |||||| |||| || |||||| |  |||||||||||||    
T  39396675 tacttctttcgatgaagatgaagttttggagctttttgcatcggttgc-tcagc--------acaagacagctatggagctgtttgagaccctgggtttt 39396585  T
Q  221 gcaaataaagtctctcgtatgt 242  Q
    ||||||||||| ||| ||||||    
T  39396584 gcaaataaagtttctggtatgt 39396563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 39188857 - 39188804
Alignment:
Q  41 aaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttcta 94  Q
    ||||||||||||||||||||||  | ||||||||||| || |||||| ||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttcta 39188804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 39223764 - 39223893
Alignment:
Q  15 aagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacgg 114  Q
    |||| ||||||||||| | ||| || ||||  ||||||||||| ||||| ||||| ||||||| || |||||| |||||  || |||| || |||||       
T  39223764 aagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataa 39223863  T
Q  115 attggttaattactttgatgaagatgaagt 144  Q
    |||| || |||  |||||||||||||||||    
T  39223864 attgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 39380600 - 39380496
Alignment:
Q  38 ttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaag 137  Q
    ||||||||| |||| | ||| ||||| ||| ||||| ||| || ||||||||||||| || |||| || ||||| |||||| ||| ||  || |||||||    
T  39380600 ttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaatttatggattgcttacttctttcgatgaag 39380501  T
Q  138 atgaa 142  Q
    |||||    
T  39380500 atgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 44730162 - 44730402
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||   |||||||||||||||||| ||||||||||| |||||||||| ||||| ||| |||||||||||||||||  ||||    
T  44730162 gagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgat 44730261  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    |||  ||||| ||| ||||||||||| |||||||||||   || |||  || |||||         || |||| |||||||||||| |||  ||| ||||    
T  44730262 ttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgt---------tgttgaacacaagatagctgcgaatgtgtttagg 44730352  T
Q  209 accctgggttttgcaaataaagtctctcgtatgttgatttagaaattctt 258  Q
    ||||||  |||||  |||||||||||||||| ||||||| ||||||||||    
T  44730353 accctgcattttgtgaataaagtctctcgtaagttgattaagaaattctt 44730402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 44950030 - 44949787
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||   ||||||||||  ||| || |||||||||||  ||||||||||||||| |||  |||||||||||||| || ||||    
T  44950030 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 44949931  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    ||| |||||| ||| ||||||||||  |||||| ||||  ||| ||| ||| |||||         ||||||| |||| |||||||||||| ||| ||||    
T  44949930 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgt---------tgctgaacacaatatagctgtgaaggtgtttagg 44949840  T
Q  209 accctgggttttgcaaataaagtctctcgta---tgttgatttagaaattctt 258  Q
    ||||||| ||||| ||||| |||||||||||   |||||||| ||||||||||    
T  44949839 accctggattttgtaaatatagtctctcgtaagttgttgattcagaaattctt 44949787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 45343012 - 45343150
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||| ||||| || ||||||||   |||||||||||||||| |||||| |||||| ||||| || ||| | | |||||| |||||| ||||||| || ||    
T  45343012 gagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaat 45343111  T
Q  109 ttacggattggttaattactttgatgaagatgaagtctt 147  Q
    | | | |||| ||| ||  |||||| |||||||||||||    
T  45343112 tcatgtattgcttacttcttttgataaagatgaagtctt 45343150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 6010 - 5767
Alignment:
Q  9 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 108  Q
    |||||||||| |||||||||||   ||||||||||  ||| || |||||||||||  ||||||||||||||| |||  |||||||||||||| || ||||    
T  6010 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 5911  T
Q  109 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtagg 208  Q
    ||| |||||| ||| ||||||||||  |||||| ||||  ||| ||| ||| |||||         ||||||| |||| |||||||||||| ||| ||||    
T  5910 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgt---------tgctgaacacaatatagctgtgaaggtgtttagg 5820  T
Q  209 accctgggttttgcaaataaagtctctcgta---tgttgatttagaaattctt 258  Q
    ||||||| ||||| ||||| |||||||||||   |||||||| ||||||||||    
T  5819 accctggattttgtaaatatagtctctcgtaagttgttgattcagaaattctt 5767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 17060698 - 17060852
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| |||||||||||   |||||||||||||||||| |||| |||||| ||| |||| ||||||| ||| |||||||| ||||| || ||| |||| |    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  114 gattggttaattactttgatgaagatgaagtcttcaagatttttgcttctgttgc 168  Q
    ||||| ||| ||| |||||| |||||||||||||  |  ||||||| ||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgc 17060852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 33562341 - 33562471
Alignment:
Q  14 gaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacg 113  Q
    ||||| ||||||||||| | ||| |||||||||||||||||||||||||| |||  || ||||| || |||||| |||||  || |||| || |||||      
T  33562341 gaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttata 33562440  T
Q  114 gattggttaattactttgatgaagatgaagt 144  Q
     |||| || |||  |||||||||||||||||    
T  33562441 aattgcttgattcttttgatgaagatgaagt 33562471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 19808961 - 19809085
Alignment:
Q  20 ttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattgg 119  Q
    |||||||||||   ||| ||||||||||||||||||   | ||| ||||||||| ||| || |||||| |||||| || |||| ||  |||| | ||||     
T  19808961 ttgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgc 19809057  T
Q  120 ttaattactttgatgaagatgaagtctt 147  Q
    ||| ||| ||||||||||||||||||||    
T  19809058 ttacttattttgatgaagatgaagtctt 19809085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University