View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_high_14 (Length: 378)
Name: NF17581_high_14
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 45699206 - 45698854
Alignment:
| Q |
15 |
tcatataaggtgtactcatgagttgttgaattagtcatttcc-----tgagcgaattttttatggacaccacaatttattagttttagtggagctatgtt |
109 |
Q |
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| T |
45699206 |
tcatataaggtgtactcatgagttgttgaattagtcatttccacgtctgagcgaattttttatggacaccacaatttattagttttagtggaggtatgtt |
45699107 |
T |
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| Q |
110 |
atttgaacaaccatttacgaaacaattgatacgacaacaaaaaatataaagagaaagtaaaaacacaatatgagtatgacaactttattgattcatcata |
209 |
Q |
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| T |
45699106 |
atttgaacaactatttacaaaacaattgatacggcaacaaaaaatataaagagaaagtaaaaacacaatatgagtatgacaactttattgattcatcaaa |
45699007 |
T |
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| Q |
210 |
gacaaagaatcttaagacgggtcatgaacatgaaataaatacattttaatcaataataactttgnnnnnnngtaatccaaacacccctcacaagctccaa |
309 |
Q |
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| T |
45699006 |
gacaaagaaccttaagacgggtcatgaacatgaaataaatacattttaatcaataataactttgttttttt-taatccaaacacccctcacaagctccat |
45698908 |
T |
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| Q |
310 |
gttggagaatgtgtgaaaaacacatcgagcttggaaataaactattgaagttca |
363 |
Q |
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| T |
45698907 |
gttggagaatgtgtgaaaaacacatcgagcttggaaataaactattgaagttca |
45698854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 188
Target Start/End: Original strand, 13961376 - 13961405
Alignment:
| Q |
159 |
agagaaagtaaaaacacaatatgagtatga |
188 |
Q |
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| T |
13961376 |
agagaaagtaaaaacacaatatgagtatga |
13961405 |
T |
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