View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17581_high_15 (Length: 372)
Name: NF17581_high_15
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 23679584 - 23679926
Alignment:
| Q |
20 |
aaaggtccttctagtacttcagctaacaaaggaaaagataggttttgtaccttttgtaacagatataaccacaccatagaattttgttatctcaaacatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23679584 |
aaaggtccttctagtacttcagctaacaaaggaaaagataggttttgtaccttttgtaacagatataaccacactatagaattttgttatctcaaacatg |
23679683 |
T |
|
| Q |
120 |
gtcaccccaacttcaataagggtaattcttctgccaacaatgctgtttctgaggcttctgatacaaataactctattggtaccaatgatgtggtagcacc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23679684 |
gtcaccccaacttcaataagggtaattcttctgccaacaatgctgtttctgaggcttctgatacaaataactctatttgtaccaatgatgtggtagcacc |
23679783 |
T |
|
| Q |
220 |
agattccaagttcagtttaactcaggagaagtatgatcatcttgtggctttgcttcaacaggctaacttgctttcctcagtttccccaccaactggtcct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23679784 |
agattccaagttcagtttaactcaggagaagtatgatcatcttgtggctttgcttcaacaggctaacttgctttcgtcagtttccccaccaactggtcct |
23679883 |
T |
|
| Q |
320 |
gtttctaaccatgttcacacttcaactatttcttatgtctctg |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
23679884 |
gtttctaaccatgttcacacttcaactatttcttctgtgtctg |
23679926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 353
Target Start/End: Original strand, 3002310 - 3002643
Alignment:
| Q |
20 |
aaaggtccttctagtacttcagctaacaaaggaaaagataggttttgtaccttttgtaacagatataaccacaccatagaattttgttatctcaaacatg |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |
|
|
| T |
3002310 |
aaaggtacttctagtacttcagctaacaaaggaaaggataggttttgtaccttttgtaacagatataaccacactatagaattttgttatctaaaatatg |
3002409 |
T |
|
| Q |
120 |
gtcaccccaacttcaataagggtaattcttctgccaacaatgctgtttctgaggcttctgatacaaataactctattggtaccaatgatgtggtagcacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002410 |
gtcaccccaacttcaataagggtaattcttctgccaacaatgctgtttctgaggcttctgatacaaataactctattggtaccaatgatgtggtagcacc |
3002509 |
T |
|
| Q |
220 |
agattccaagttcagtttaactcaggagaagtatgatcatcttgtggctttgcttcaacaggctaacttgctttcctcagtttccccaccaactggtcct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3002510 |
agattccaagttcagtttaactcaggagaagtatgatcatcttgtggctttgcttcaacaggctaacttgctttcctcagtttccccaccaactggtcct |
3002609 |
T |
|
| Q |
320 |
gtttctaaccatgttcacacttcaactatttctt |
353 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| |
|
|
| T |
3002610 |
atttctaatcatgttcatacttcaactatttctt |
3002643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 173 - 330
Target Start/End: Original strand, 18475131 - 18475288
Alignment:
| Q |
173 |
gcttctgatacaaataactctattggtaccaatgatgtggtagcaccagattccaagttcagtttaactcaggagaagtatgatcatcttgtggctttgc |
272 |
Q |
| |
|
||||||||||||| ||| || |||||| | ||||||||||||| ||| |||||| |||| ||| ||||| || || || ||||||||| || || | | |
|
|
| T |
18475131 |
gcttctgatacaagtaattccattggttcatctgatgtggtagcaacaggttccaacttcaatttgactcaagataaataagatcatcttatgtctctac |
18475230 |
T |
|
| Q |
273 |
ttcaacaggctaacttgctttcctcagtttccccaccaactggtcctgtttctaacca |
330 |
Q |
| |
|
| ||||| |||||||| ||||| |||| || ||||||||||||| |||||| ||||| |
|
|
| T |
18475231 |
tccaacaagctaactttctttcttcagcatctccaccaactggtcttgtttccaacca |
18475288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 37740159 - 37739826
Alignment:
| Q |
20 |
aaaggtccttctagtacttcagctaacaaaggaaaagataggttttgtaccttttgtaacagatataaccacaccatagaattttgttatctcaaacatg |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
37740159 |
aaaggtacttctagtacttcagctaacaaaggaaaatataggttttgtaccttttgtaacagatataaccacactatagaattttgttatctaaaacatg |
37740060 |
T |
|
| Q |
120 |
gtcaccccaacttcaataagggtaattcttctgccaacaatgctgtttctgaggcttctgatacaaataactctattggtaccaatgatgtggtagcacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37740059 |
gtcaccccaacttcaataagggtaattcttctgccaacaatgttgtttctgaggcttctgatacaaataactctattggtaccaatgatgtggtagcacc |
37739960 |
T |
|
| Q |
220 |
agattccaagttcagtttaactcaggagaagtatgatcatcttgtggctttgcttcaacaggctaacttgctttcctcagtttccccaccaactggtcct |
319 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37739959 |
agattccaaattcagtttaactcaggagaagtatgatcatcttgtggctttgcttcaacaggctaacttgctttcctcagtttccccaccaactggtcct |
37739860 |
T |
|
| Q |
320 |
gtttctaaccatgttcacacttcaactatttctt |
353 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| |
|
|
| T |
37739859 |
gtttctaatcatgttcatacttcaactatttctt |
37739826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 349
Target Start/End: Complemental strand, 23904711 - 23904392
Alignment:
| Q |
30 |
ctagtacttcagctaacaaaggaaaagataggttttgtaccttttgtaacagatataaccacaccatagaattttgttatctcaaacatggtcaccccaa |
129 |
Q |
| |
|
|||||| || ||||||||| || ||| ||||||||||||| ||||||||||||| |||||| || ||||| ||||||||| |||||||||||||| || |
|
|
| T |
23904711 |
ctagtaattgagctaacaagggcaaatataggttttgtacgttttgtaacagatttaaccatactatagagttttgttattagaaacatggtcacccgaa |
23904612 |
T |
|
| Q |
130 |
cttcaataagggtaattcttctgccaacaatgctgtttctgaggcttctgatacaaataactctattggtaccaatgatgtggtagcaccagattccaag |
229 |
Q |
| |
|
|||||| ||||||||||| |||||| | || ||| ||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23904611 |
cttcaacaagggtaattcatctgcctaaaaagctagttctgaggcttctgatacaaacaactccattggtcccaatgatgtggtagcaccagattccaag |
23904512 |
T |
|
| Q |
230 |
ttcagtttaactcaggagaagtatgatcatcttgtggctttgcttcaacaggctaacttgctttcctcagtttccccaccaactggtcctgtttctaacc |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| || | |
|
|
| T |
23904511 |
ttcagtttaactcaggagaagtatgatcatcttgtggctttgcttcaacgggctaatttgctttcctcagtttccccaccaactagtcctgtttccaatc |
23904412 |
T |
|
| Q |
330 |
atgttcacacttcaactatt |
349 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
23904411 |
atgttcatacttcaactatt |
23904392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University