View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_high_17 (Length: 337)
Name: NF17581_high_17
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 16471751 - 16472065
Alignment:
| Q |
9 |
caagaatatgcagagcatgaaggggttgattttaattgtcccttcacagtatttgacttttttcttgcttcaccagtgccaaactaattgatattatata |
108 |
Q |
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| T |
16471751 |
caagaatatgcagagcatgaaggggttgattttaatcgtcccttcacagtatttgacttttttcttgcttcaccagtgccaaactaattgatattatata |
16471850 |
T |
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| Q |
109 |
gcatatgaaattctgggggagatttgatatgtctataggaccaggatccatgcaatccgagtgtactcttattcattgaaaatattcaattgacttcaat |
208 |
Q |
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| T |
16471851 |
gcatatgaaattctgggggagatttgatatgtctataggaccaggatccatgcaatccgagtgtactcttattcattgaaaatattcaattgacttcaat |
16471950 |
T |
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| Q |
209 |
ttgaggagatggttgattttttgtgtgttaagcttcacctttcaggatatttgataattcgaagttagaatcgtaagataagtgtaatttggctaataat |
308 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16471951 |
ttgacgagatggttgattttttgtgtgttaagcttcacctttcaggagatttgataattcgaagtt-gaatcgtaagataagtgtaatttggctaataat |
16472049 |
T |
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| Q |
309 |
ataatgttattcatga |
324 |
Q |
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||||||||||| |||| |
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| T |
16472050 |
ataatgttatttatga |
16472065 |
T |
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