View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_high_22 (Length: 291)
Name: NF17581_high_22
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 7491588 - 7491852
Alignment:
| Q |
17 |
aaataggtaattattttttcttgaatttgaattgcatttgtgatcaccttaaaaagtatcaacccaaagaatggaaacaatggttgctataccataagcc |
116 |
Q |
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| T |
7491588 |
aaataagtaattattttttcttgaatttgaattacatttgtgatcaccttaaaaagtatcaagccaaagaatggaaacaatggttgctataccagaagcc |
7491687 |
T |
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| Q |
117 |
agtaacaacacatcagtttttaaggagctttatcgaaaggcgctgtatcattgtaacaaatattccatacagcttccatagaatccttgctagttgttga |
216 |
Q |
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| T |
7491688 |
agtaacaacacatcagttttcaaggagctttatcgaaaggcgctgtatcattgtaacaaatattccatacagcttccatagaatccttgctagttgttga |
7491787 |
T |
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| Q |
217 |
accagcgcaaaatggatttgaagatagcgatttcaaaactcnnnnnnngatgcattctggttcat |
281 |
Q |
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| T |
7491788 |
agcagcacaaaatggatttgaagatagcgatttcaaaactctttttttgatgcattctggttcat |
7491852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 7494450 - 7494514
Alignment:
| Q |
34 |
ttcttgaatttgaattgcatttgtgatcaccttaaaaagtatcaaccc--aaagaatggaaacaa |
96 |
Q |
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| T |
7494450 |
ttcttcaatttgaattacatttgtggtcaccttaaaagctatcaagccaaaaagaatggaaacaa |
7494514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 19151886 - 19152010
Alignment:
| Q |
80 |
ccaaagaatggaaacaatggttgctataccataagccagtaacaacacatcagtttttaaggagctttatcgaaaggcgctgtatcattgtaacaaatat |
179 |
Q |
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| T |
19151886 |
ccaaagaatggaaacaatggttgctataccataagccagtaac-ataccacaatctttaaggagctctatcaaaaggcgctgtatcgttataacaagttt |
19151984 |
T |
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| Q |
180 |
tccatacagcttccatagaatccttg |
205 |
Q |
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| T |
19151985 |
cccatacagcttccatagcatccttg |
19152010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 19158021 - 19158175
Alignment:
| Q |
41 |
atttgaattgcatttgtgatcaccttaaaaagtatcaacccaaagaatggaaacaatggttgctataccataagccagtaac--aacacatcagttttta |
138 |
Q |
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| T |
19158021 |
atttgaattacatttatgatcaccttaaatggtatcaagccaaagaatggaaacaatgatttctatacaataagccagtaacataccaca-cagttttta |
19158119 |
T |
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| Q |
139 |
aggagctttatcgaaaggcgctgtatcattgtaacaaatattccatacagcttccatag |
197 |
Q |
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|||| |||| ||||||||||||||||| |||||| | | ||||||||||||||||| |
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| T |
19158120 |
---agctctatcaaaaggcgctgtatcattataacaagtttcccatacagcttccatag |
19158175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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