View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_high_27 (Length: 272)
Name: NF17581_high_27
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_high_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 272
Target Start/End: Original strand, 42301654 - 42301920
Alignment:
| Q |
5 |
ctcctcgcatgcatgaatataaggatatttttcaagataatttaataagtttgacatgtgttattaaattcatatgtaatgtaacaaaaaatattggatt |
104 |
Q |
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| T |
42301654 |
ctccttgcatgcatgaatataaggatatttttcaagataatttaataagtttgacatgtgttattaaattcatatgtaatgtaacagaaaatattggatt |
42301753 |
T |
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| Q |
105 |
ctttatnnnnnnntaaactttaatcacctgttcgaatggtggaaatatgatacaaataaattttgatcacttgtttgaatgttggaatcttctatcttga |
204 |
Q |
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| T |
42301754 |
ctttataaaaaa-taaactttaatcacctgttcgaatggtggaaatatgatacaaataaattttgatcacttgtttgaatgttggaatcttctatcttga |
42301852 |
T |
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| Q |
205 |
gatttttggatttagaaaattcaaatccatcagtgttaggaccatcacgaggagaattaactaataat |
272 |
Q |
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| T |
42301853 |
gatttttggatttagaaaattcaaatccatcagtgttaggactatcacgaggagaattaactaataat |
42301920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 42302134 - 42302047
Alignment:
| Q |
18 |
tgaatataaggatatttttcaagataatttaataagtttgacatgtgttattaaattcatatgtaatgtaacaaaa-aatattggatt |
104 |
Q |
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|||||||||||||||||||||| ||| |||||| ||| |||||||||||||||| ||| | || ||||||||||| ||||||||||| |
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| T |
42302134 |
tgaatataaggatatttttcaacatattttaatgagtccgacatgtgttattaaactcacaagtgatgtaacaaaagaatattggatt |
42302047 |
T |
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