View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_high_47 (Length: 205)
Name: NF17581_high_47
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_high_47 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 3704 - 3529
Alignment:
| Q |
19 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
118 |
Q |
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| T |
3704 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
3605 |
T |
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| Q |
119 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaag |
194 |
Q |
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| T |
3604 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaag |
3529 |
T |
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Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 31332219 - 31332394
Alignment:
| Q |
19 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
118 |
Q |
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| T |
31332219 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
31332318 |
T |
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| Q |
119 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaag |
194 |
Q |
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| T |
31332319 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaag |
31332394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 31319966 - 31320135
Alignment:
| Q |
19 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaatggagggatcctagcttctattgattcaagaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| |
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| T |
31319966 |
gaaactattttgttcccaaagattattcatctctagaaggtccttcaatggaccaacaatatgaaaaaggaggtatgttagcttctgttgattcaagaat |
31320065 |
T |
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| Q |
119 |
acttattttggcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacacca |
188 |
Q |
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| T |
31320066 |
agttctttttgcaggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacacca |
31320135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 33522337 - 33522279
Alignment:
| Q |
129 |
gcaggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacacc |
187 |
Q |
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| T |
33522337 |
gcaggttcaacaattggtggtggttctgctgttaattggtcagcatcgattaaaacacc |
33522279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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