View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17581_high_5 (Length: 520)

Name: NF17581_high_5
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17581_high_5
NF17581_high_5
[»] chr3 (4 HSPs)
chr3 (298-507)||(1138409-1138618)
chr3 (131-251)||(1138665-1138785)
chr3 (1-90)||(1138868-1138957)
chr3 (442-483)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (446-483)||(3110531-3110568)
chr2 (442-479)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (442-483)||(6025961-6026002)
chr1 (446-481)||(1118941-1118976)
chr1 (438-483)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (445-477)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (437-480)||(32888960-32889003)
chr7 (445-481)||(7245942-7245978)
[»] chr6 (3 HSPs)
chr6 (447-481)||(2730831-2730865)
chr6 (445-482)||(26373115-26373152)
chr6 (138-186)||(18699812-18699860)
[»] chr4 (3 HSPs)
chr4 (442-480)||(207500-207538)
chr4 (446-483)||(47789196-47789233)
chr4 (173-201)||(51034024-51034052)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 298 - 507
Target Start/End: Complemental strand, 1138618 - 1138409
Alignment:
Q  298 gtctgttacaaataatgtggagaaatgaaaatggcattttttgaagctaatgtgtgaacgaaagatggggacatcacgacggtggttcaatatcgaccac 397  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  1138618 gtctgtcacaaataatgtggagaaatgaaaatggcattttttgaagctaatctgtgaatgaaagatggggacatcatgacggtggttcaatatcgaccac 1138519  T
Q  398 tctgtcgtagctgtatgaaggtaaataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaac 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138518 tctgtcgtagctgtatgaaggtaaataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaac 1138419  T
Q  498 atagtataat 507  Q
    ||||||||||    
T  1138418 atagtataat 1138409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 131 - 251
Target Start/End: Complemental strand, 1138785 - 1138665
Alignment:
Q  131 ggggtgattgaaattgtggatctctggatggaaacacttcagaacttccagaaccaagtttacttcttcgacactaaaacttcagtttgcttgcatttat 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138785 ggggtgattgaaattgtggatctcttgatggaaacacttcagaacttccagaaccaagtttacttcttcgacactaaaacttcagtttgcttgcatttat 1138686  T
Q  231 tttcttctgattggttgtttg 251  Q
    |||||||||||||||||||||    
T  1138685 tttcttctgattggttgtttg 1138665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 1138957 - 1138868
Alignment:
Q  1 tatgacttcgaattttaccttccgtctttggtatactttagttgcctattcaaaattggtaggatcttctattgcaacagtgttactaca 90  Q
    ||||||||| ||||||||||||| |||| ||||| |||||||||| ||||||| |||||  ||||  |||||||||||||||||||||||    
T  1138957 tatgacttcaaattttaccttccttcttaggtatgctttagttgcatattcaatattggcgggataatctattgcaacagtgttactaca 1138868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 28802805 - 28802764
Alignment:
Q  442 tatgctatttagtacaaagagttgtcaaatagtggctatagc 483  Q
    ||||||||||| || |||| ||||||||||||||||||||||    
T  28802805 tatgctatttaatataaagtgttgtcaaatagtggctatagc 28802764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 483
Target Start/End: Complemental strand, 3110568 - 3110531
Alignment:
Q  446 ctatttagtacaaagagttgtcaaatagtggctatagc 483  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3110568 ctatttagtacaaagcgttgtcaaatagtggctatagc 3110531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 479
Target Start/End: Complemental strand, 28044746 - 28044709
Alignment:
Q  442 tatgctatttagtacaaagagttgtcaaatagtggcta 479  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  28044746 tatgcgatttagtacaaagtgttgtcaaatagtggcta 28044709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 6026002 - 6025961
Alignment:
Q  442 tatgctatttagtacaaagagttgtcaaatagtggctatagc 483  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  6026002 tatgctatttagtacaaaatgttgtcaaatagtggctatagc 6025961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 481
Target Start/End: Original strand, 1118941 - 1118976
Alignment:
Q  446 ctatttagtacaaagagttgtcaaatagtggctata 481  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1118941 ctatttagtacaaagtgttgtcaaatagtggctata 1118976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 483
Target Start/End: Complemental strand, 26161641 - 26161596
Alignment:
Q  438 gtggtatgctatttagtacaaagagttgtcaaatagtggctatagc 483  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||    
T  26161641 gtggtatgctatttagtacaaagtattgtcaaatagcagctatagc 26161596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 477
Target Start/End: Complemental strand, 28734201 - 28734169
Alignment:
Q  445 gctatttagtacaaagagttgtcaaatagtggc 477  Q
    |||||||||||||||||||||||||||||||||    
T  28734201 gctatttagtacaaagagttgtcaaatagtggc 28734169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 480
Target Start/End: Original strand, 32888960 - 32889003
Alignment:
Q  437 agtggtatgctatttagtacaaagagttgtcaaatagtggctat 480  Q
    |||| |||||||||||||||||||  ||||||||||||||||||    
T  32888960 agtgatatgctatttagtacaaagtattgtcaaatagtggctat 32889003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 481
Target Start/End: Complemental strand, 7245978 - 7245942
Alignment:
Q  445 gctatttagtacaaagagttgtcaaatagtggctata 481  Q
    |||||||||||||||| |||||||||||| |||||||    
T  7245978 gctatttagtacaaagtgttgtcaaatagcggctata 7245942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 481
Target Start/End: Complemental strand, 2730865 - 2730831
Alignment:
Q  447 tatttagtacaaagagttgtcaaatagtggctata 481  Q
    |||||||||||||| ||||||||||||||||||||    
T  2730865 tatttagtacaaagtgttgtcaaatagtggctata 2730831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 482
Target Start/End: Original strand, 26373115 - 26373152
Alignment:
Q  445 gctatttagtacaaagagttgtcaaatagtggctatag 482  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  26373115 gctatttagtacaaagtgttgtcaaatagtggttatag 26373152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 18699860 - 18699812
Alignment:
Q  138 ttgaaattgtggatctctggatggaaacacttcagaacttccagaacca 186  Q
    |||||||||| ||||||| || |||| ||||||| ||||||||||||||    
T  18699860 ttgaaattgtagatctctagaaggaagcacttcataacttccagaacca 18699812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 480
Target Start/End: Original strand, 207500 - 207538
Alignment:
Q  442 tatgctatttagtacaaagagttgtcaaatagtggctat 480  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  207500 tatgctatttagtacaaagtattgtcaaatagtggctat 207538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 483
Target Start/End: Original strand, 47789196 - 47789233
Alignment:
Q  446 ctatttagtacaaagagttgtcaaatagtggctatagc 483  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  47789196 ctatttagtacaaactgttgtcaaatagtggctatagc 47789233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 51034052 - 51034024
Alignment:
Q  173 aacttccagaaccaagtttacttcttcga 201  Q
    |||||||||||||||||||||||||||||    
T  51034052 aacttccagaaccaagtttacttcttcga 51034024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University