View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_high_6 (Length: 516)
Name: NF17581_high_6
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 45642196 - 45642644
Alignment:
| Q |
15 |
aacatcaatgctccttttcctctccatgtgaaatgtgtttcaccttcaaccctttgacgtgatgaaactgcacctttcgaccttcaaccgtcacgcttcc |
114 |
Q |
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| T |
45642196 |
aacatcaatgctccttttcctctccatgtgaaatgtgtttcaccttcaaccctttgacgtgatgaaactgcacctttcaaccttcaaccttcacgcttcc |
45642295 |
T |
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| Q |
115 |
accttcatgcttcgtgtttcagcaacctttgtgtttgcacctccattctctctccaacgaaaccacacgctttgacgacaaactgtggtggactgaaata |
214 |
Q |
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| T |
45642296 |
accttcatgcttcgtgtttcagcaacctttgtgtttgcacctccattctctctccaacgaaaccacatgctttgacgacaaactgtggtggactgaaata |
45642395 |
T |
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| Q |
215 |
tgtgcacaaaggtacgtggtacattacc-nnnnnnntactgacgtgtcttgtggagctgtgttcggcacgtgtacttcgtttacgggtttggaatcgtta |
313 |
Q |
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| T |
45642396 |
tgtgcacaaaggtacgtggtacattaccaaaaaaaatactgacgtgtcttgtggagctgtgttcggcacgtgtacttcgtttacgtgtttggaatcgtta |
45642495 |
T |
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| Q |
314 |
gatctgagtttgaataactacaagttct------ttgttgttgttgtttagtctgaaatgaataacgatggggaata-ggtttcggaattggcgttgatg |
406 |
Q |
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| T |
45642496 |
gatctgagtttgaataactacaagttctttgttgttgttgttgttgtttagtctgaaatgaataacgatggggaatagggttttggaattggcgttgatg |
45642595 |
T |
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| Q |
407 |
ggtcatggatttggcgttgatgtgtcagaattgacggtgttagcgttga |
455 |
Q |
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| T |
45642596 |
ggtcatggatttggcgttgatgtgtcagaattgacggtgttagcgttga |
45642644 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 43437339 - 43437303
Alignment:
| Q |
296 |
acgggtttggaatcgttagatctgagtttgaataact |
332 |
Q |
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| T |
43437339 |
acgggtttggaattgttagatctgagttcgaataact |
43437303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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