View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17581_low_1 (Length: 813)

Name: NF17581_low_1
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17581_low_1
NF17581_low_1
[»] chr4 (57 HSPs)
chr4 (13-797)||(27571228-27572012)
chr4 (187-741)||(27418996-27419547)
chr4 (185-497)||(27411379-27411690)
chr4 (173-792)||(27566870-27567485)
chr4 (173-509)||(27414212-27414550)
chr4 (172-504)||(27421841-27422176)
chr4 (183-504)||(27424432-27424755)
chr4 (268-426)||(27556384-27556542)
chr4 (551-792)||(27422210-27422448)
chr4 (264-425)||(27478884-27479045)
chr4 (264-425)||(27485944-27486105)
chr4 (264-377)||(27506724-27506837)
chr4 (264-378)||(27412689-27412803)
chr4 (551-798)||(27414562-27414810)
chr4 (222-419)||(27513735-27513932)
chr4 (264-376)||(27444795-27444907)
chr4 (225-376)||(27431110-27431261)
chr4 (264-361)||(27563347-27563444)
chr4 (264-419)||(27486967-27487122)
chr4 (264-374)||(27585717-27585827)
chr4 (264-354)||(27595434-27595524)
chr4 (264-421)||(27559241-27559398)
chr4 (225-377)||(27425838-27425990)
chr4 (268-376)||(27557516-27557624)
chr4 (264-419)||(27526113-27526268)
chr4 (264-419)||(27479885-27480040)
chr4 (265-384)||(27501336-27501455)
chr4 (264-419)||(27505703-27505858)
chr4 (283-425)||(27527139-27527281)
chr4 (262-419)||(27498399-27498556)
chr4 (264-361)||(27503964-27504061)
chr4 (264-419)||(27476671-27476826)
chr4 (265-348)||(27554364-27554447)
chr4 (264-374)||(27415650-27415760)
chr4 (264-361)||(27468328-27468425)
chr4 (264-361)||(27475580-27475677)
chr4 (268-361)||(27524566-27524659)
chr4 (267-359)||(27490004-27490096)
chr4 (265-361)||(27514933-27515029)
chr4 (264-426)||(27446124-27446286)
chr4 (264-361)||(27420450-27420547)
chr4 (264-425)||(27497323-27497484)
chr4 (225-374)||(27565913-27566062)
chr4 (264-361)||(27570050-27570147)
chr4 (265-377)||(27502809-27502921)
chr4 (264-359)||(17970343-17970438)
chr4 (611-792)||(27424835-27425026)
chr4 (265-311)||(27507815-27507861)
chr4 (264-314)||(27600642-27600692)
chr4 (264-361)||(27423264-27423361)
chr4 (262-307)||(27473988-27474033)
chr4 (264-307)||(27460574-27460617)
chr4 (264-307)||(27466917-27466960)
chr4 (264-419)||(27469444-27469599)
chr4 (264-319)||(27495620-27495675)
chr4 (268-359)||(27508896-27508987)
chr4 (268-314)||(27577407-27577453)
[»] chr5 (3 HSPs)
chr5 (264-419)||(1756758-1756913)
chr5 (235-434)||(1755967-1756166)
chr5 (265-419)||(1754243-1754397)
[»] chr3 (16 HSPs)
chr3 (264-419)||(55084770-55084925)
chr3 (268-425)||(38032260-38032417)
chr3 (268-425)||(38035033-38035190)
chr3 (268-425)||(38038525-38038682)
chr3 (268-425)||(50913474-50913631)
chr3 (268-425)||(38027433-38027590)
chr3 (264-377)||(38043929-38044042)
chr3 (264-419)||(38024876-38025031)
chr3 (264-419)||(38031328-38031483)
chr3 (264-359)||(50910004-50910099)
chr3 (264-419)||(50911870-50912025)
chr3 (264-310)||(48840713-48840759)
chr3 (264-321)||(38028767-38028824)
chr3 (264-356)||(50904793-50904885)
chr3 (264-419)||(38036794-38036949)
chr3 (264-321)||(38040082-38040139)
[»] chr8 (3 HSPs)
chr8 (268-425)||(21608235-21608392)
chr8 (264-338)||(21634608-21634682)
chr8 (264-321)||(21607297-21607354)
[»] chr2 (1 HSPs)
chr2 (264-359)||(3073613-3073708)


Alignment Details
Target: chr4 (Bit Score: 648; Significance: 0; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 13 - 797
Target Start/End: Complemental strand, 27572012 - 27571228
Alignment:
Q  13 gagatgaaaaaagctgcaactgtttcaacaatatttggtgtcattaataatttaacattctcattcaggaaacattttgatttccgtaggaatgattgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27572012 gagatgaaaaaagctgcaactgtttcaacaatatttggtgtcattaataatttaacattctcattcaggaaacattttgatttccgtaggaatgattgat 27571913  T
Q  113 taatacatggacggaacaataaaaaaatcttcaacagnnnnnnnnnntggtttctatagtaattagcttcaactaatctatctaaatctccattagcatg 212  Q
    |||||||||||||||||||||||||| ||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571912 taatacatggacggaacaataaaaaa-tcttcaacagaaaaaaaaaatggtttctatagtaattagcttcaactaatctatctaaatctccattagcatg 27571814  T
Q  213 atctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27571813 atctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccattggatgatcatatccaaattcttct 27571714  T
Q  313 tctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagc 412  Q
    |||| |||||||||||||||||||||  |||| ||| |||| ||||||| ||||||||| ||||| ||||||||||| |||||||| |||||||||||||    
T  27571713 tctgattgatttagtaattcttgaaacgatggctggctcaaatatgatactggaatcacgaaccgcctcattctatctccaacatagactgcgagatagc 27571614  T
Q  413 cttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctgataagctttgctatgcggaaacccattgtttttattattta 512  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27571613 cttttgggacttcaagtcccttggcagtctcttgtgttttggaaaatgatggcattctgataagctttgctatgcggaaacccattgtttttagtattta 27571514  T
Q  513 tggttcctcac-nnnnnnnntactgatgatggcagaggattggatgagaaagaaatatttgagtttttataactcagaatggaaaagatttgtgttgctt 611  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571513 tggttcctcacaaaaaaaaatactgatgatggcagaggattggatgagaaagaaatatttgagtttttataactcagaatggaaaagatttgtgttgctt 27571414  T
Q  612 tgagaactcaaggaatagtgtatatatagttgctaagggtctgaaacaaaccaattaaccaatgaatgtattttgatggattgtaatagagtctagttag 711  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571413 tgagaactcaaggaatagtgtatatatagttgctaagggtctcaaacaaaccaattaaccaatgaatgtattttgatggattgtaatagagtctagttag 27571314  T
Q  712 gtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaaatactctac 797  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27571313 gtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagctaaatataagaacatgcaaatactctac 27571228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 187 - 741
Target Start/End: Original strand, 27418996 - 27419547
Alignment:
Q  187 aatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccaccca 286  Q
    ||||||||| |||||||||||||||||| || |  ||| || ||||||||||| || | || |||  |||| || |||||||||||||| ||||||||||    
T  27418996 aatctatcttaatctccattagcatgatttacaaatcactt-aagcgagaagtgagttgtaagaaagcatcttcaccgcaaggaattgtaagaccaccca 27419094  T
Q  287 taggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctcattct 386  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||  |||| ||| |||| ||||||| ||||||||| ||||| ||||||||    
T  27419095 ttggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatactggaatcacgaaccgcctcattct 27419194  T
Q  387 atcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctgataagctttgctatg 486  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  27419195 atctccaacatagactgcgagatagccttttgggacttcaagtcccttggcagtctcttgtgttttggaaaatgatggcattctgataagctttgctatg 27419294  T
Q  487 cggaaacccattgtttttattatttatggttcctcacnnnnnnnntactgatgatggcagaggattggatgagaaagaaatatttgagtttttataactc 586  Q
    ||||||||||||||||||||||| ||||| |||||||        |||||||||||||||||||||||||||||||||||||||||| || |||||| ||    
T  27419295 cggaaacccattgtttttattatgtatggctcctcac-aaaaagatactgatgatggcagaggattggatgagaaagaaatatttgaattcttataattc 27419393  T
Q  587 agaatggaaaagatttgtgttgctttgagaactcaaggaatagtgtatatatagttgctaagggtctgaaacaaaccaattaaccaatgaatgtattttg 686  Q
    |||||| ||||||||| ||||| ||||||||  ||||||||| ||||||||||||| ||||||| ||   ||||||||||||| || |||||||| ||||    
T  27419394 agaatgcaaaagatttatgttgatttgagaatccaaggaataatgtatatatagtttctaagggcct-ctacaaaccaattaatcagtgaatgtaatttg 27419492  T
Q  687 atggattgtaatagagtctagttaggtacaagggttcacatggtattgtcttata 741  Q
     ||   ||| |||| ||| ||| | | ||||||| ||||||||||||||| ||||    
T  27419493 gtgagctgtgatagggtcaagtgaaggacaagggatcacatggtattgtcctata 27419547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 185 - 497
Target Start/End: Original strand, 27411379 - 27411690
Alignment:
Q  185 ctaatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacc 284  Q
    ||||||||||| ||||||||||||| |||| || || ||| | ||| ||||| || || ||| ||||||||||||||| |||||||||||||||||||||    
T  27411379 ctaatctatcttaatctccattagcttgatttacagttcact-caaacgagatgtgaggttttggaattcatcctcgctgcaaggaattgtgagaccacc 27411477  T
Q  285 cataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctcatt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||||||||||||    
T  27411478 cataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgatactggaatcacgaaccgtctcatt 27411577  T
Q  385 ctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctgataagctttgcta 484  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27411578 ctatctccaacatagactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctaataagctttgcta 27411677  T
Q  485 tgcggaaacccat 497  Q
    |||||||||||||    
T  27411678 tgcggaaacccat 27411690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 173 - 792
Target Start/End: Complemental strand, 27567485 - 27566870
Alignment:
Q  173 aattagcttcaactaatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaat 272  Q
    ||||||| ||||||| |||||||||||||||||| |||||| ||  ||||||||||||| ||||||| || | || |||  |||| |||| |||||||||    
T  27567485 aattagcctcaactattctatctaaatctccatttgcatgaccttcagctcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaat 27567386  T
Q  273 tgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcaca 372  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||||||     
T  27567385 tgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaagtatgatactggaatcacg 27567286  T
Q  373 aaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctga 472  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||| | || |||    
T  27567285 aaccgtctcattctatctccaacatagactgcgagatagccttttgggacttcaaatcccttgctagatccttgagttttggaaaatgatgcccttttga 27567186  T
Q  473 taagctttgctatgcggaaacccattgtttttattatttatggt-tcctcacnnnnnnnntactgatgatggcagaggattggatgagaaagaaatattt 571  Q
    |||   | ||||| |||||||||||||||||     ||||||||  |  ||         ||||||| |||  |||||||||||||||||||||||||||    
T  27567185 taatactggctatacggaaacccattgtttt-----tttatggtagcaccaaaaaaaaaatactgattatgttagaggattggatgagaaagaaatattt 27567091  T
Q  572 gagtttttataactcagaatggaaaagatttgtgttgctttgagaactcaaggaata--gtgtatatatagttgctaagggtctgaaacaaaccaattaa 669  Q
    || || | || | | |  ||| |||||| ||||| ||  ||||||||| || |||||  || ||||||||||||||||||| |||  |||||||| |||     
T  27567090 gaattctgatgatttatgatgcaaaagacttgtggtg-attgagaactaaaagaataatgtatatatatagttgctaagggcctg-tacaaaccacttag 27566993  T
Q  670 ccaatgaatgtattttgatggattgtaatagagtctagttaggtacaagggttcacatggtattgtcttatagaggtcattttcaaggattagatgaagc 769  Q
    |||||||| || || |||||   ||| |||| | ||| | ||| || |||| |||||||| ||||| | || || |||||||||||| |||||||||||     
T  27566992 ccaatgaaagtgttgtgatgagctgtgatagggcctactgagggaccagggatcacatggcattgtatcatggaagtcattttcaagcattagatgaaga 27566893  T
Q  770 taaatataagaacatgcaaatac 792  Q
    |||||  ||||||||||| ||||    
T  27566892 taaatggaagaacatgcacatac 27566870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 509
Target Start/End: Original strand, 27414212 - 27414550
Alignment:
Q  173 aattagcttcaactaatctatctaaatctccattagcatgat--ctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaagga 270  Q
    ||||||| |||||||||||||||||| |||| ||||||| ||  ||| ||||||||||| ||||||||| || ||| |||||||||| || | ||| |||    
T  27414212 aattagcctcaactaatctatctaaagctccgttagcataatatctacagctcaattcatgcgagaagtgaggttttggaattcatcttcactgcacgga 27414311  T
Q  271 attgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatca 370  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||  |||||||    
T  27414312 attgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagtatgatacaggaatca 27414411  T
Q  371 caaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattct 470  Q
    |||||||||||||| |||| ||||| || ||||| |||||||||||||| ||||||| ||||||| ||||| ||||||||   |||||||||||| ||||    
T  27414412 caaaccgtctcattttatctccaacgtagactgcaagatagccttttggcacttcaaatcccttgctagatgcttgtgttgacgaaaatgatggctttct 27414511  T
Q  471 gataagctttgctatgcggaaacccattgtttttattat 509  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  27414512 gataagctttgctatgcggaaacccattgttttttttat 27414550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 172 - 504
Target Start/End: Original strand, 27421841 - 27422176
Alignment:
Q  172 taattagcttcaactaatctatctaaatctccattagcatgatctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaa 271  Q
    |||||||| | ||||||||||||||| |||  ||||||||||| ||  ||||||||||| |||||||| || | || |||   ||| || | ||||||||    
T  27421841 taattagccttaactaatctatctaagtctg-attagcatgatttacggctcaattcaatcgagaagtgagttgtaagaaagaatcttcactgcaaggaa 27421939  T
Q  272 ttgtgagaccacccataggatgatcatatcc----aaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    |||||||||||||| | |||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27421940 ttgtgagaccacccgttggatgatcgtatccatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgatactggaa 27422039  T
Q  368 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcat 467  Q
    |||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||  |||||||||||||||    
T  27422040 tcacgaaccgtttcattctatctccaacatagactgcgagatagccttttgggacttcaaatcccttggtagatgcttgcgttgaggaaaatgatggcat 27422139  T
Q  468 tctgataagctttgctatgcggaaacccattgttttt 504  Q
    ||||||||| |||||||||||||||||||||||||||    
T  27422140 tctgataagttttgctatgcggaaacccattgttttt 27422176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 183 - 504
Target Start/End: Original strand, 27424432 - 27424755
Alignment:
Q  183 aactaatctatctaaatctccattagcatgat--ctagagctcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagac 280  Q
    ||||||||||| | |||||| |||||||||||  ||| ||||||||||| ||||||||| || ||| ||||||||||||||| ||| ||||| || ||||    
T  27424432 aactaatctatattaatctctattagcatgatatctacagctcaattcatgcgagaagtgaggtttcggaattcatcctcgctgcacggaatggtaagac 27424531  T
Q  281 cacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtct 380  Q
    ||||||| ||||||||||||||| |||||||||| | ||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||| ||    
T  27424532 cacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatactggaatcacaaaccgcct 27424631  T
Q  381 cattctatcgccaacatacactgcgagatagccttttgggacttcaagtcccttggtagattcttgtgttttggaaaatgatggcattctgataagcttt 480  Q
    ||||  ||| |||||||| |||||||||||||||||||||||||| | ||| ||  ||||| ||||||||   |||||||||||||||||||||||||||    
T  27424632 catttgatctccaacatagactgcgagatagccttttgggacttcgaatcctttactagatgcttgtgttgacgaaaatgatggcattctgataagcttt 27424731  T
Q  481 gctatgcggaaacccattgttttt 504  Q
    ||||||||||||||||||||||||    
T  27424732 gctatgcggaaacccattgttttt 27424755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 268 - 426
Target Start/End: Original strand, 27556384 - 27556542
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||  |||| |  ||||    
T  27556384 ggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggttggttcaataatgaaatgggaa 27556483  T
Q  368 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttca 426  Q
    ||||||| ||  ||||| | || |||||||| |||||||||||||||||||||||||||    
T  27556484 tcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgggacttca 27556542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 551 - 792
Target Start/End: Original strand, 27422210 - 27422448
Alignment:
Q  551 ttggatgagaaagaaatatttgagtttttataactcagaatggaaaagatttgtgttgctttgagaactcaaggaatagtgtatatatagttgctaaggg 650  Q
    ||||||||||||||||||||||| || | |||| | |  ||| |||||| ||||||| ||| |||| | ||| || ||||||||| ||||||||||||||    
T  27422210 ttggatgagaaagaaatatttgaattctgataatttatgatgcaaaagacttgtgttactt-gagacc-caaagagtagtgtataaatagttgctaaggg 27422307  T
Q  651 tctgaaacaaaccaattaaccaatgaatgtattttgatggattgtaatagagtctagttaggtacaagggttcacatggtattgtcttatagaggtcatt 750  Q
     ||  | ||||||||||| |||||||| |||||||||||   ||| |||| | ||||| ||| ||||| | |||||||||||||||||||||| ||||||    
T  27422308 actcta-caaaccaattagccaatgaaagtattttgatgagctgtgatagggcctagtgagggacaagagatcacatggtattgtcttatagaagtcatt 27422406  T
Q  751 ttcaaggattagatgaagctaaatataagaacatgcaaatac 792  Q
    |||||||||||||||||| |||||  ||||||||||||||||    
T  27422407 ttcaaggattagatgaagttaaatggaagaacatgcaaatac 27422448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 264 - 425
Target Start/End: Original strand, 27478884 - 27479045
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||| |    
T  27478884 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt 27478983  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    || |  ||||||||  ||  | | || |||||||||||||| | |||||| ||||| |||||    
T  27478984 gggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttggaacttc 27479045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 264 - 425
Target Start/End: Original strand, 27485944 - 27486105
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||||| |    
T  27485944 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt 27486043  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    || |  ||||||||  ||  | | || |||||||||||||| | |||||| ||||| |||||    
T  27486044 gggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttggaacttc 27486105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 27506837 - 27506724
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||| |||||||||| |    
T  27506837 gcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatatt 27506738  T
Q  364 ggaatcacaaaccg 377  Q
    || |||||||||||    
T  27506737 gggatcacaaaccg 27506724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 264 - 378
Target Start/End: Complemental strand, 27412803 - 27412689
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||| | | ||| ||||||||||||||||||||||||||||||| |    
T  27412803 gcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatatt 27412704  T
Q  364 ggaatcacaaaccgt 378  Q
    || ||||||||||||    
T  27412703 gggatcacaaaccgt 27412689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 551 - 798
Target Start/End: Original strand, 27414562 - 27414810
Alignment:
Q  551 ttggatgagaaagaaatatttgagtttttataactcagaatggaaaagatttgtgttgctttgagaactcaaggaatag-tgtatatatagttgctaagg 649  Q
    ||||||||||||||  ||||||| || | |||| | || ||| |||||| ||||||||||| |||||| ||| |||||| ||||||||||||||| ||||    
T  27414562 ttggatgagaaagatttatttgaattatgataatttaggatgcaaaagacttgtgttgctt-gagaacacaatgaataggtgtatatatagttgccaagg 27414660  T
Q  650 gtctgaaacaaaccaattaaccaatgaatgtattttgatggattgtaatagagtctagttaggtacaagggttcacatggtattgtcttatagaggtcat 749  Q
    | ||  |  ||| |||| | |||||| | | |||||||||   ||| |||| | ||||| ||| ||||||| ||||||||||||||| |||||| |||||    
T  27414661 gactctacaaaatcaatcagccaatggaagcattttgatgagctgtgatagggcctagtgagggacaagggatcacatggtattgtcctatagaagtcat 27414760  T
Q  750 tttc-aaggattagatgaagctaaatataagaacatgcaaatactctact 798  Q
    |||| ||  |||||||||||||||||  ||||||||||| |||| |||||    
T  27414761 tttcaaactattagatgaagctaaatggaagaacatgcacataccctact 27414810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 222 - 419
Target Start/End: Original strand, 27513735 - 27513932
Alignment:
Q  222 tcaattcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttga 321  Q
    |||||||||||||||||| | || || |||| | || || | ||||||||| |||||||||||||| |||||||||||| || ||| |||||| |||||     
T  27513735 tcaattcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttgg 27513834  T
Q  322 tttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || |  |||||||| ||  | | ||||||||||||||||| ||| |||||||||||  ||||| | || || ||||||||||| ||||| ||||||||    
T  27513835 ttcaacaattcttggaacgaggtttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttgg 27513932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 27444795 - 27444907
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    |||||||||||||||||||||||| ||||| |||||||| |||| ||| || |||||||| | ||||||||||||| ||| |||| |||||||||||| |    
T  27444795 gcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatatt 27444894  T
Q  364 ggaatcacaaacc 376  Q
    || ||||||||||    
T  27444895 gggatcacaaacc 27444907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 27431110 - 27431261
Alignment:
Q  225 attcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgattt 324  Q
    |||||| |||||||||| ||||| |||  | || || | |||||||||||||||||||||  | ||||| ||||||||||||| ||| || ||||||||     
T  27431110 attcaaacgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattc 27431209  T
Q  325 agtaattcttgaaataatggttggttcaagtatgataatggaatcacaaacc 376  Q
    |  |||||||||||| | ||||||||||||||||||| ||| ||||||||||    
T  27431210 aacaattcttgaaatgacggttggttcaagtatgatattgggatcacaaacc 27431261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 27563347 - 27563444
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||| | || || |||||||| |||| |||||||||||||||||    
T  27563347 gcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgata 27563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 264 - 419
Target Start/End: Complemental strand, 27487122 - 27486967
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| || ||||||||||| |||||||||||| |||||| |||||| ||||| || |  |||||||||||  |||||||||| |||||||||||     
T  27487122 gcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattcttgaaacgatggttggtttaagtatgataaa 27487023  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || |||||||||||  ||||| | || || || |||||||| ||||| || |||||    
T  27487022 gggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27486967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 27585827 - 27585717
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||| | |  || |||||||| ||||||||||||||||||||||      
T  27585827 gcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttgaaacaatggttggttcaagtatgatacg 27585728  T
Q  364 ggaatcacaaa 374  Q
    || ||||||||    
T  27585727 gggatcacaaa 27585717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 264 - 354
Target Start/End: Complemental strand, 27595524 - 27595434
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaag 354  Q
    |||||||||||| ||||||||||| |||||||   ||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  27595524 gcaaggaattgtaagaccacccatgggatgattgaatccaaactctttttctgcttgacttagtaattcttgaaataatggtcggttcaag 27595434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 27559241 - 27559398
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||  ||| ||| | ||||||| | | ||| |||||  |||| |      
T  27559241 gcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctgattggcttaataactattgaaatgaagattgattcaataatgaaata 27559340  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttggga 421  Q
    ||||||| ||| |   ||||| | || |||||||| ||||||||||||||||||||||    
T  27559341 ggaatcagaaatctcttcattttgtctccaacataaactgcgagatagccttttggga 27559398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 225 - 377
Target Start/End: Complemental strand, 27425990 - 27425838
Alignment:
Q  225 attcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgattt 324  Q
    |||||||||||| || | || | | ||| ||||||||  ||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||   |||| |     
T  27425990 attcaagcgagatgtcatatgttgaaatacatcctcggtgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactc 27425891  T
Q  325 agtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccg 377  Q
    | ||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||    
T  27425890 aataagtcttgaaatgatggttggttcaagtatgatattgggatcacataccg 27425838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 268 - 376
Target Start/End: Complemental strand, 27557624 - 27557516
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    ||||| |||||||||||||| |||||| ||||| |||||| ||| || |||||||| || |||||||||||| |||||||||| |||||||| | ||| |    
T  27557624 ggaatagtgagaccacccattggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggtttaagtatgacattggga 27557525  T
Q  368 tcacaaacc 376  Q
    |||||||||    
T  27557524 tcacaaacc 27557516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 27526113 - 27526268
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| |||||||||||| | |||||||||||| |||||| ||| || |||||  | |  |||||||| ||| | | |||||||||||||||||      
T  27526113 gcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctcaacaattcttggaatgaggtttggttcaagtatgataca 27526212  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    ||||||||||||||  ||||| | || |||||||||||||| ||||| || |||||    
T  27526213 ggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttgg 27526268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 264 - 419
Target Start/End: Complemental strand, 27480040 - 27479885
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| |||||||||||||| |||||||||||| |||||| ||| || ||||| || |  || | ||| ||| ||| |||||||||||||||||      
T  27480040 gcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaacttttggaatgatgtttggttcaagtatgataca 27479941  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    ||||||||||| ||  ||||| | || || || || ||||| ||||||||||||||    
T  27479940 ggaatcacaaaacgcttcattttctctcctacgtatactgctagatagccttttgg 27479885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 265 - 384
Target Start/End: Complemental strand, 27501455 - 27501336
Alignment:
Q  265 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatg 364  Q
    |||||||| |||||||||||| | |||||||| ||| |||||| ||| || ||||| || |  || |||||||| ||||||||||| |||||||||| ||    
T  27501455 caaggaatagtgagaccacccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagtatgatattg 27501356  T
Q  365 gaatcacaaaccgtctcatt 384  Q
    | |||||||||||| |||||    
T  27501355 ggatcacaaaccgtttcatt 27501336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 27505703 - 27505858
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| |||||||||||||| ||||| |||||| |||||| ||| || ||||| || |  |||||||| ||| | | |||||||||||||||||      
T  27505703 gcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatgaggtttggttcaagtatgataca 27505802  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    ||||||||||||||  ||||| | || || || |||||||| ||||| || |||||    
T  27505803 ggaatcacaaaccgcttcattttctctcctacgtacactgctagatacccctttgg 27505858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 283 - 425
Target Start/End: Complemental strand, 27527281 - 27527139
Alignment:
Q  283 cccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaatcacaaaccgtctca 382  Q
    ||||| ||||||||||||||||| ||||| || |||||| | || || ||| ||||  |||||||||| |||| ||||| ||| |||||||||||| ||     
T  27527281 cccatgggatgatcatatccaaactcttcctcagcttgactcagcaactctagaaacgatggttggtttaagtgtgatattgggatcacaaaccgtttct 27527182  T
Q  383 ttctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
     | |||| ||||||||||| || |||||||| ||||| |||||    
T  27527181 gtttatctccaacatacaccgcaagatagccctttggtacttc 27527139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 262 - 419
Target Start/End: Complemental strand, 27498556 - 27498399
Alignment:
Q  262 ccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||||||||| |||||||||||||| |||||||||||| | |||| ||| || ||||| || |  || ||||| ||  |||||||||||||||||||||    
T  27498556 ccgcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaacaagtcttggaacgatggttggttcaagtatgata 27498457  T
Q  362 atggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
      || |||||||| ||| |||||   || |||||||| ||||| ||||| || |||||    
T  27498456 tagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttgg 27498399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 27504061 - 27503964
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||| | |  || ||||||||| | |||||||||||||||||||    
T  27504061 gcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 264 - 419
Target Start/End: Complemental strand, 27476826 - 27476671
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| || ||||||||||| |||||||||||| |||||| ||| ||   |||  | || | |||||| ||| | | |||||||||||||||||      
T  27476826 gcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttcttggaatgaggtttggttcaagtatgataca 27476727  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    ||||||||||||||  ||||| | || |||||||||||||| ||||| || |||||    
T  27476726 ggaatcacaaaccgcttcattttctcaccaacatacactgctagatatccctttgg 27476671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 348
Target Start/End: Complemental strand, 27554447 - 27554364
Alignment:
Q  265 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttgg 348  Q
    |||||||||||||||| |||| | ||||||||||||||||||| ||| || |||||||| || |||||||||||  ||||||||    
T  27554447 caaggaattgtgagactacccgttggatgatcatatccaaattgttcctcagcttgattcagcaattcttgaaacgatggttgg 27554364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 27415760 - 27415650
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||||| | ||||||||||||||| ||||| || |||||| | |  || ||||||||  |||||||||||||||||||||      
T  27415760 gcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagtatgatatg 27415661  T
Q  364 ggaatcacaaa 374  Q
    || ||||||||    
T  27415660 gggatcacaaa 27415650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 27468328 - 27468425
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||| || | |||| | |  || ||||||||| | |||||||| ||||||||||    
T  27468328 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgata 27468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 27475580 - 27475677
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||| | |  || ||||||||| | ||||| |||||||||||||    
T  27475580 gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 268 - 361
Target Start/End: Complemental strand, 27524659 - 27524566
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |  || ||||||||| | ||||||||||| |||||||    
T  27524659 ggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaaggttggttcaaatatgata 27524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 27490096 - 27490004
Alignment:
Q  267 aggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 359  Q
    |||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |  || ||||||||| |||||| ||| ||||||||    
T  27490096 aggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaatgatggtttgtttaagtatga 27490004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 265 - 361
Target Start/End: Complemental strand, 27515029 - 27514933
Alignment:
Q  265 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||||| || | |||| | |  || ||||||||| | ||||| |||||||||||||    
T  27515029 caaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 426
Target Start/End: Complemental strand, 27446286 - 27446124
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| | ||||||| ||||  ||||||||||| |||| |||||||||| |||  |||   | ||||||||| | ||||| |||||  ||||   |    
T  27446286 gcaaggaatcgagagaccatccattcgatgatcatattcaaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagtt 27446187  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttca 426  Q
    ||||||||||| ||  ||||| | || |||||||| || || |||||||||||||||||||||    
T  27446186 ggaatcacaaatcgcttcattttttctccaacataaaccgcaagatagccttttgggacttca 27446124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 27420547 - 27420450
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||  ||||| | || ||  |||||||| | |||||| ||||||||||||    
T  27420547 gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaatgaaggttggctcaagtatgata 27420450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 425
Target Start/End: Original strand, 27497323 - 27497484
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||  | ||||||||||||||||| ||||| || |||||| | |  || | |||||| ||||||||||| |||||||| |      
T  27497323 gcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatattgaaacaatggttggtttaagtatgagata 27497422  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    || |||||||||||  |   | |||| |||||||||||||| | |||||| ||||| |||||    
T  27497423 gggatcacaaaccgcttttgtttatctccaacatacactgcaacatagccctttggaacttc 27497484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 27565913 - 27566062
Alignment:
Q  225 attcaagcgagaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgattt 324  Q
    |||||||| |||||| | || | ||||  |||| ||||| |||||||| ||||| |||||||| |||||||||||||||   ||||| ||  ||||  |     
T  27565913 attcaagcaagaagttatatgttggaagacatcttcgccacaaggaatggtgaggccacccattggatgatcatatccatgctcttcctcaacttgtatc 27566012  T
Q  325 agtaattcttgaaataatggttggttcaagtatgataatggaatcacaaa 374  Q
    || || |||||||| ||||||||||||| ||||||||  || ||||||||    
T  27566013 agcaagtcttgaaacaatggttggttcaggtatgatatggggatcacaaa 27566062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 264 - 361
Target Start/End: Original strand, 27570050 - 27570147
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||||||| ||||| |||||||| |||||||||||||| || ||||| || |||||| | || || ||||||||| | |||||| | ||||||||||    
T  27570050 gcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggcttaagtatgata 27570147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 377
Target Start/End: Original strand, 27502809 - 27502921
Alignment:
Q  265 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatg 364  Q
    |||||||| || ||||||||||| ||||| |||||||||||||||||  | |||||  | || || ||||||||| | | ||| ||||| ||||| | ||    
T  27502809 caaggaatagtaagaccacccattggatggtcatatccaaattcttccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattg 27502908  T
Q  365 gaatcacaaaccg 377  Q
    |||||||||||||    
T  27502909 gaatcacaaaccg 27502921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 17970438 - 17970343
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 359  Q
    ||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||  || | || || | ||||||| | | |||||||||||||||    
T  17970438 gcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaagtatga 17970343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 611 - 792
Target Start/End: Original strand, 27424835 - 27425026
Alignment:
Q  611 ttgagaactcaaggaatagtgtatatatagttgctaagggtctgaaacaaaccaattaaccaatgaatgtattttgatggattgtaatagagtctagtta 710  Q
    |||||||| || ||||||||||||||||||  |||||||  ||  |  ||| |||||| |||||||| |||||||| ||   ||| |||| | ||||| |    
T  27424835 ttgagaacccatggaatagtgtatatatagaagctaaggaactctacaaaatcaattagccaatgaaagtattttggtgagctgtgatagggcctagtga 27424934  T
Q  711 ggtacaagggttcacatggtatt--------gtcttatagaggtcattttcaaggat--tagatgaagctaaatataagaacatgcaaatac 792  Q
     | ||||||| ||||||||||||        |||||||||| |||||||||||||||  ||||||||| |||||  |||||||| |||||||    
T  27424935 cggacaagggatcacatggtattgtactattgtcttatagaagtcattttcaaggattatagatgaagttaaatggaagaacattcaaatac 27425026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 27507815 - 27507861
Alignment:
Q  265 caaggaattgtgagaccacccataggatgatcatatccaaattcttc 311  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  27507815 caaggaattgtaagaccacccattggatggtcatatccaaattcttc 27507861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 27600692 - 27600642
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttc 314  Q
    |||||||||||||||||||||||| |||||||  || ||||||||||||||    
T  27600692 gcaaggaattgtgagaccacccattggatgattgtaaccaaattcttcttc 27600642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 27423361 - 27423264
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgata 361  Q
    ||||||||  ||||| |||||||| |||||||  || ||||| ||||| || |||||| | |  |||||||||||| | |||||||||||||||||||    
T  27423361 gcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattcttgaaatgaaggttggttcaagtatgata 27423264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 27474033 - 27473988
Alignment:
Q  262 ccgcaaggaattgtgagaccacccataggatgatcatatccaaatt 307  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||    
T  27474033 ccgcaaggaatggtgagaccacccattggatgatcatattcaaatt 27473988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 27460617 - 27460574
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaatt 307  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  27460617 gcaaggaatggtgagaccacccattggatgatcatattcaaatt 27460574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 27466960 - 27466917
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaatt 307  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  27466960 gcaaggaatagtgagaccacccattggatgatcatattcaaatt 27466917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 419
Target Start/End: Complemental strand, 27469599 - 27469444
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| || ||||||||||| ||||| |||||| |||||| |||||| |||||  | |  | |||||| ||| ||| ||| ||||| |||||||      
T  27469599 gcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatgatgtttgcttcaaatatgatata 27469500  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || |||||||||||  ||||| | || || || |||||||| ||||| || |||||    
T  27469499 gggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27469444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 319
Target Start/End: Complemental strand, 27495675 - 27495620
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgctt 319  Q
    ||||||||| |||||||||||||| ||||||| | ||||||| |||||||| ||||    
T  27495675 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 27495620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 359
Target Start/End: Complemental strand, 27508987 - 27508896
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 359  Q
    ||||| ||||| |||||| | ||||||||||||||||| ||||| || || ||||| |  || ||||||||| | ||||||||||| |||||    
T  27508987 ggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagcctgattcaacaagtcttgaaatgaaggttggttcaaatatga 27508896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 27577453 - 27577407
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttc 314  Q
    ||||||||||||||||||||||| ||||   ||||||||||||||||    
T  27577453 ggaattgtgagaccacccatagggtgattgaatccaaattcttcttc 27577407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 1756758 - 1756913
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||||| || ||||||||||||||||||||||| |||||| | |  || | ||||||  ||||||||||||||||||||| |    
T  1756758 gcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatatt 1756857  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || |||||||||||  ||  | | || ||||||| |||||| |||||||| |||||    
T  1756858 gggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttgg 1756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 434
Target Start/End: Original strand, 1755967 - 1756166
Alignment:
Q  235 gaagtaagatttaggaattcatcctcgccgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattctt 334  Q
    |||||||  |||| || |||||||||   ||| ||||||||||||||| |  | |||||||||||||  ||||  |||||||||||   |||||||||||    
T  1755967 gaagtaaagtttaagatttcatcctccttgcatggaattgtgagaccaacagttggatgatcatatctgaattgctcttctgcttggcatagtaattctt 1756066  T
Q  335 gaaataatggttggttcaagtatgataatggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttcaagtccctt 434  Q
    ||||| | ||||| ||||||||||||| || |||||| | | |  |||||| |||  ||||||| ||||| || ||||||||   |||||||| ||||||    
T  1756067 gaaattaaggttgattcaagtatgatattgaaatcactatctgcttcattcgatcttcaacatagactgcaaggtagcctttctagacttcaaatccctt 1756166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 265 - 419
Target Start/End: Original strand, 1754243 - 1754397
Alignment:
Q  265 caaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatg 364  Q
    |||||||| |||||||||||||| |||||||||||| |||| | ||| || | ||  ||||| |||| ||||||| | | |||||||||||||||||  |    
T  1754243 caaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttagcaatttttgaaatgacgattggttcaagtatgatacgg 1754342  T
Q  365 gaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    | |||||||||||  |||||   || |||||||| || || ||||| ||||||||    
T  1754343 ggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttgg 1754397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 264 - 419
Target Start/End: Complemental strand, 55084925 - 55084770
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||| || ||  || | |  || ||||||||| |||||||||||||||| || |      
T  55084925 gcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagtcttgaaatgatggttggttcaagtaagacata 55084826  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || |||||||||||  ||||| | || |||||||||||||| ||| | ||||||||    
T  55084825 gggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttgg 55084770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 425
Target Start/End: Complemental strand, 38032417 - 38032260
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    |||||||| ||||| ||||| ||||||  ||| || ||||| ||||| | |||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  38032417 ggaattgtaagaccgcccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatactggaa 38032318  T
Q  368 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    ||| ||||| ||||||| | || |||||||||||||| |||||||||||||| |||||    
T  38032317 tcataaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc 38032260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 425
Target Start/End: Complemental strand, 38035190 - 38035033
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    |||||||||||||||||||| ||||||  ||| || ||||| ||||| |||||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  38035190 ggaattgtgagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaa 38035091  T
Q  368 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    |||  |||| || |||| | || ||||||||||| || |||| |||||||||||||||    
T  38035090 tcatgaaccttcgcattttctctccaacatacaccgcaagatggccttttgggacttc 38035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 425
Target Start/End: Complemental strand, 38038682 - 38038525
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    |||||||| ||||| ||||| ||||||  ||| || ||||| ||||| |||||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  38038682 ggaattgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaa 38038583  T
Q  368 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    |||  |||| ||||||| | || |||||||||||||| |||| |||||||||||||||    
T  38038582 tcatgaaccttctcattttctctccaacatacactgcaagatggccttttgggacttc 38038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 425
Target Start/End: Complemental strand, 50913631 - 50913474
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    |||||||| ||||||||||| ||||||   || |||||||| ||||| |||||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  50913631 ggaattgtaagaccacccattggatgacagtagccaaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaa 50913532  T
Q  368 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    |||  ||||   ||||| | || |||||||||||||| ||||||||||||||||||||    
T  50913531 tcaagaacctcttcattttctctccaacatacactgcaagatagccttttgggacttc 50913474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 268 - 425
Target Start/End: Complemental strand, 38027590 - 38027433
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    |||||||| ||||||||||| ||||||  ||| || ||||| ||||| | |||  | || |||||||||||||| || |  |||||| ||||||  ||||    
T  38027590 ggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatacgggaa 38027491  T
Q  368 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    ||| ||||| ||||||| | || |||||||||||||| |||| ||||||||| |||||    
T  38027490 tcataaaccttctcattttctctccaacatacactgcaagatggccttttggaacttc 38027433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 38044042 - 38043929
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| | || || ||||||||  | | ||| ||||||||||| |      
T  38044042 gcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacata 38043943  T
Q  364 ggaatcacaaaccg 377  Q
    || |||||||||||    
T  38043942 gggatcacaaaccg 38043929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 38024876 - 38025031
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||| | | ||| | ||||||  | | ||||||||||||||| |      
T  38024876 gcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagtatgacatg 38024975  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || || ||||||||  |||||   || |||||||| ||||| |||||||| |||||    
T  38024976 gggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttgg 38025031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 38031328 - 38031483
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||||| | | ||| | ||||||  | | ||||||||||||||| |      
T  38031328 gcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagttttgaaaggaagcttggttcaagtatgacatg 38031427  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || || ||||||||  |||||   || |||||||| ||||| |||||||| |||||    
T  38031428 gggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttgg 38031483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 50910099 - 50910004
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 359  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| ||  ||||||| |  || | ||||||| | | |||||||||||||||    
T  50910099 gcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagttttgaaatgaagcttggttcaagtatga 50910004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 50911870 - 50912025
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    |||||||||||| || |||||||| || |||||||||||||||||||| ||||||||| | |  || | ||||||| | | |||||||||||||||        
T  50911870 gcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagcttggttcaagtatgacttg 50911969  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || |||||||||||| ||||  | || |||||||| || || |||||||| |||||    
T  50911970 gggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttgg 50912025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 48840713 - 48840759
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattctt 310  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  48840713 gcaaggaattgtgaggccacccattggatgatcatatccaaattctt 48840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 38028767 - 38028824
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttga 321  Q
    ||||||||||||||| || ||||| ||||| ||||||||||||||||| || ||||||    
T  38028767 gcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttga 38028824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 50904793 - 50904885
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagta 356  Q
    ||||||||| ||||| |||||||| |||||||||||||| ||||| || |||||| || | |  || ||||||||| | | ||||||||||||    
T  50904793 gcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagtcttgaaatgaagtttggttcaagta 50904885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 419
Target Start/End: Original strand, 38036794 - 38036949
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataat 363  Q
    ||||||||||||||| || ||||| ||||| |||||||| |||||||| || |||||| | |  || | ||||||| | | ||||||||||||||  |      
T  38036794 gcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaattttgaaatgaagcttggttcaagtatggcatg 38036893  T
Q  364 ggaatcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgg 419  Q
    || |  ||||||||| |||||   || ||||| |||||||| |||||||| |||||    
T  38036894 gggacaacaaaccgtttcatttgctctccaacgtacactgcaagatagccctttgg 38036949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 38040082 - 38040139
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttga 321  Q
    ||||||||||||||| || ||||| ||||| |||||||| |||||||| || ||||||    
T  38040082 gcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttga 38040139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 425
Target Start/End: Complemental strand, 21608392 - 21608235
Alignment:
Q  268 ggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgataatggaa 367  Q
    |||||||| ||||| ||||| ||||||  ||| || ||||| ||||| |||||  | || |||||||||||||| || |  |||||| |||||| |||||    
T  21608392 ggaattgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaa 21608293  T
Q  368 tcacaaaccgtctcattctatcgccaacatacactgcgagatagccttttgggacttc 425  Q
    |||  |||| ||||||| | || |||||||||||||| |||||||||||||| |||||    
T  21608292 tcatgaaccttctcattttctctccaacatacactgcaagatagccttttggaacttc 21608235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 21634682 - 21634608
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaa 338  Q
    ||||||||||||||  || |||||  |||||||||||||||||||||| ||||||||| | || || ||||||||    
T  21634682 gcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaa 21634608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 21607297 - 21607354
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttga 321  Q
    ||||||||  ||||| |||||||| || |||||||||||||||||||| |||||||||    
T  21607297 gcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttga 21607354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 3073708 - 3073613
Alignment:
Q  264 gcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatga 359  Q
    ||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||  || | || || | ||||||| | | |||||||||||||||    
T  3073708 gcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggttcaagtatga 3073613  T

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