View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_10 (Length: 430)
Name: NF17581_low_10
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 72 - 333
Target Start/End: Complemental strand, 41124642 - 41124381
Alignment:
| Q |
72 |
ctatttaccaagaaacattatattcatatcggcatcacaaatattcaagaaaagtaacaagattactcaagaaaacagcattagtgaaattaaattcatg |
171 |
Q |
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| T |
41124642 |
ctatttaccaagaaacattatattcatatcagcatcacaaatattcaagaaaagtaacaagattactcaagaaaacagcattagtgaaattaaattcatg |
41124543 |
T |
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| Q |
172 |
ggcagggaaaaaagaatgaaaattttacctttttacccctctctatgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaac |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41124542 |
ggcagggaaaaaagaatgaaaattttacctttttacccctctctatgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaac |
41124443 |
T |
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| Q |
272 |
accaaaatttccagaaccaagttccttcaatggctcatatctttcttccatgtcaaccctct |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41124442 |
accaaaatttccagaaccaagttccttcaatggctcatatctttcttccatgtcaaccctct |
41124381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 41118538 - 41118458
Alignment:
| Q |
195 |
tttacctttttacccctctctatgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacacca |
275 |
Q |
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| T |
41118538 |
tttacctttttgcccctctctatgtatttgagagcaacaagctcgccagtatttttgtctttagccaacctagcaatacca |
41118458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 4322669 - 4322769
Alignment:
| Q |
216 |
atgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacaccaaaatttccagaaccaagttccttcaatggctcatatcttt |
315 |
Q |
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| T |
4322669 |
atgtatttgatagcaacaagttctcctgtctttttgtctttagccaacctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatcttt |
4322768 |
T |
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| Q |
316 |
c |
316 |
Q |
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| T |
4322769 |
c |
4322769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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