View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_11 (Length: 426)
Name: NF17581_low_11
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 12 - 408
Target Start/End: Complemental strand, 38043604 - 38043208
Alignment:
| Q |
12 |
atcatctggtattgtctttggatgtctctctaaaatcctaaataagagtgcatatatagtaagnnnnnnnttctgaatgaaaggtcagtagagtatgact |
111 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||| |
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| T |
38043604 |
atcatatggtattgtctttggatgtctctctaaaatcctcaataagagtgcatatatagtaagcccccccttctgaacgaaaggtcagtagggtacgact |
38043505 |
T |
|
| Q |
112 |
tggaagtcaaatgagatggctaggtttaacatgtgttcttcctaatgataacgcggctcaatgccgttgctgtagtgtgaattctaaggtagatactggc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38043504 |
tggaagtcaaatgagatggctaggtttaacatgtgttcttcctattgataacgtggctcaatgccgttgctgtagtgtgaattctaaggtagatactggc |
38043405 |
T |
|
| Q |
212 |
tagttggctcataaaggttaggaggcaatgtggaacctttatcaaaggcttggtcaacagtcagaacatggtagtgcatgtttgaacctacaggtagctg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
38043404 |
tagttggctcataaaggttaggaggcaatgtggaacctttatcaaaggcttggtcaacagtcagaacatagtagtccatgtttgaacctacaggtagctg |
38043305 |
T |
|
| Q |
312 |
aaatgttgtctctgaaaattgaatttttaatttcaacatacctatatatttcgttttaaataattatagtcttttgaagaaattccagtgacaactg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
38043304 |
aaatgttgtctctgaaaattgaatttttaatttcaacatacctatatatttcgttttaaataattgtagtcttttgaagaaattccagtaacaactg |
38043208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 182 - 393
Target Start/End: Original strand, 50905481 - 50905689
Alignment:
| Q |
182 |
tgtagtgtgaattctaaggtagatactggctagttggctcataaaggttaggaggcaatgtggaacctttatcaaaggcttggtcaacagtcagaacatg |
281 |
Q |
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| T |
50905481 |
tgtagtgtgaattctaaggtaa----tggctagttggttcataaatgttaggagggaacttggagcctgtatcaaagtcttggtcagcagtcagaagata |
50905576 |
T |
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| Q |
282 |
gtagtgcatgtttgaacctacaggtagctgaaatgttgt-ctctgaaaattgaatttttaatttcaacatacctatatatttcgttttaaataattatag |
380 |
Q |
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||||| || ||||||||| |||| |||| |||| | ||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
50905577 |
gtagtacacgtttgaacccacagatagcagaaaagctgtactctgataattgaatttttaatttcaacatctgtatatatttcgttttaaataattgcag |
50905676 |
T |
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| Q |
381 |
tcttttgaagaaa |
393 |
Q |
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||||||||||||| |
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| T |
50905677 |
tcttttgaagaaa |
50905689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 48839105 - 48839137
Alignment:
| Q |
109 |
acttggaagtcaaatgagatggctaggtttaac |
141 |
Q |
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| T |
48839105 |
acttggaagtcaaatgagatggctaggtttaac |
48839137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 179 - 339
Target Start/End: Complemental strand, 17969810 - 17969649
Alignment:
| Q |
179 |
tgctgtagtgtgaattctaaggtagatactggctagttggctcataaaggttaggaggcaatgtggaacctttatcaaaggcttggtcaacagtcagaac |
278 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
17969810 |
tgctgtagtgtgaattctaaggtagataatggatagttggctcataaatgttaggaagcaacgtggaacctttatcaaaggcttggtcagcagtcagaag |
17969711 |
T |
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| Q |
279 |
atggtagtgcatgtttgaacctacaggtagctgaaatgttgt-ctctgaaaattgaattttt |
339 |
Q |
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|| ||||| |||||||||||| ||||||||| |||||| ||| || |||||||||||||||| |
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| T |
17969710 |
atagtagtacatgtttgaacccacaggtagcagaaatgctgtactgtgaaaattgaattttt |
17969649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 179 - 339
Target Start/End: Complemental strand, 3073080 - 3072919
Alignment:
| Q |
179 |
tgctgtagtgtgaattctaaggtagatactggctagttggctcataaaggttaggaggcaatgtggaacctttatcaaaggcttggtcaacagtcagaac |
278 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
3073080 |
tgctgtagtgtgaattctaaggtagataatggatagttggctcataaatgttaggaagcaacgtggaacctttatcaaaggcttggtcagcagtcagaag |
3072981 |
T |
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| Q |
279 |
atggtagtgcatgtttgaacctacaggtagctgaaatgttgt-ctctgaaaattgaattttt |
339 |
Q |
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|| ||||| |||||||||||| ||||||||| |||||| ||| || |||||||||||||||| |
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| T |
3072980 |
atagtagtacatgtttgaacccacaggtagcagaaatgctgtactgtgaaaattgaattttt |
3072919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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