View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_12 (Length: 416)
Name: NF17581_low_12
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 5689455 - 5689839
Alignment:
| Q |
7 |
aaataatactgaaagacctatccaatagcatgcctataaaataaaatcttgtcgttatactctagagatgagggcaagcataagcattggttagagattc |
106 |
Q |
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| T |
5689455 |
aaataatacagaaagacctatccaatagcatgcctataaaataaaatcttgtcgttatactctagagatgagggcaagcataagcattggttagagattc |
5689554 |
T |
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| Q |
107 |
aagtacactatggcaatgaacaacgtttcaatgacatgcctattccttctccttcttccattggtctcatgcgccaaaaataatcaggtctttcattttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5689555 |
aagtacactatggcaatgaacaacgtttcaatgacatgcctattccttctccttcttccattggtctcatgcaccaaaaataatcaggtctttcattttt |
5689654 |
T |
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| Q |
207 |
tnnnnnnnnnnnnnnnnncataatcnnnnnnnnctcctctggatttctatgtaggaattcatatctattggattttctcacaggtttatctagtggaatt |
306 |
Q |
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| T |
5689655 |
-------ctactactactcataatcttttttttctcctctggatttctatgtaggaattcatatctattggattttctcacaggtttatctagtggaatt |
5689747 |
T |
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| Q |
307 |
tggagagcacaataatggagataaaacactgcatgaaatagagaatacacatcactcttatttgcttttggtaaaagaaactgaggaggaag |
398 |
Q |
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| T |
5689748 |
tggagagcacaataatggacataaaacactgcatgaaatagagaatacacatcactcttatttgcttttggtaaaagaaactgaggaggaag |
5689839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 278 - 398
Target Start/End: Original strand, 5680406 - 5680529
Alignment:
| Q |
278 |
attttctcacaggtttatctagtggaatttggagagcacaataat---ggagataaaacactgcatgaaatagagaatacacatcactcttatttgcttt |
374 |
Q |
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||||||||||||||||||||||| ||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5680406 |
attttctcacaggtttatctagttgaacttggagagaacaatattaaaggagataaaacactgcatgaaatagagaatacacatcactcttatttgcttt |
5680505 |
T |
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| Q |
375 |
tggtaaaagaaactgaggaggaag |
398 |
Q |
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|||| |||||||||||||| |||| |
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| T |
5680506 |
tggtgaaagaaactgaggatgaag |
5680529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 5680248 - 5680304
Alignment:
| Q |
150 |
tccttctccttcttccattggtctcatgcgccaaaaataatcaggtctttcattttt |
206 |
Q |
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|||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||| |
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| T |
5680248 |
tcctgctccttcttccattggtgtcatgcaccaataataatcaggtctttcattttt |
5680304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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