View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17581_low_13 (Length: 403)
Name: NF17581_low_13
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_13 |
 | |
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| [»] scaffold0883 (1 HSPs) |
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| [»] scaffold0095 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 38817132 - 38817507
Alignment:
| Q |
1 |
agaggaggatacccacccatgttattattggaagggaggcagaaagcctctattaaatctgacagtggtgggggcaatatccctacaaagtctgacatag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
38817132 |
agaggaggatacccacccatgttattattggaagggaggcagaaagcctctattaaatctgacagggatgggggcaatatccctacaaagtctgacatag |
38817231 |
T |
|
| Q |
101 |
attatcaaaaaagaaaggctgagatagacttggaattggaaaagttaaagtccatgtctttacaagaggtaatcacatgtgctgctcaagcagttgctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38817232 |
attatcaaaaaagaaaggctgagatagacttggaattggaaaagttaaagtccatgtctttacaagaggtaatcgcatgtgctgctcaagcagttgctga |
38817331 |
T |
|
| Q |
201 |
agcagaagccgccatggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgcagcggcagctattgcaaaagcagcagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38817332 |
agcagaagccgccatggcagaagctgaagaggcaacaaaggaggcggaggctgcagaagcagaagcagatgcagcggcagctattgcaaaagcagcagaa |
38817431 |
T |
|
| Q |
301 |
aaatcactaaaatcgctgcggtaaatctcggcttttccttccgttgtaatactgttacataatacattaatagggatcatggaag |
385 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38817432 |
aaatca---------ctgcggtaaatctcggcttttccttccgttgtaatactgttacataatacattaatagggatcatggaag |
38817507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 293
Target Start/End: Original strand, 39457912 - 39458091
Alignment:
| Q |
114 |
aaaggctgagatagacttggaattggaaaagttaaagtccatgtctttacaagaggtaatcacatgtgctgctcaagcagttgctgaagcagaagccgcc |
213 |
Q |
| |
|
|||| |||||||||| || ||| | |||||| ||| |||||||||| ||||||| | ||| |||||||| |||||| ||||| |||||||||||| |
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|
| T |
39457912 |
aaagtctgagatagatttagaaatagaaaaggtaaggtccatgtctgctcaagaggctgccgcatatgctgctcgagcagtcgctgatgcagaagccgcc |
39458011 |
T |
|
| Q |
214 |
atggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgcagcggcagctattgcaaaagc |
293 |
Q |
| |
|
|| || ||||||||||||||| | ||||||||||||||||||||||| || |||| |||||| | |||| ||||| |||| |
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|
| T |
39458012 |
atagcggaagctgaagaggcagctaaggaggcagaggctgcagaagcggatgcagctgcagcagaagcttttgcagaagc |
39458091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 39457838 - 39457883
Alignment:
| Q |
13 |
ccacccatgttattattggaagggaggcagaaagcctctattaaat |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
39457838 |
ccacccatgttattattggaagggaggcagaaaacctctatgaaat |
39457883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39465197 - 39465301
Alignment:
| Q |
1 |
agaggaggatacccacccatgttattattggaagggaggcagaaagcctc-tattaaatctgacagtggtgggggcaatatccctacaaagtctgacata |
99 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||| ||| ||||||||| ||| |||| |||||| | || | ||||||||||||| || ||||| || |
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|
| T |
39465197 |
agaggaagacaccaacccatgttattattggaaggggggcggaaagcctcatatgaaatttgacagggctgagagcaatatccctacgaattctgagtta |
39465296 |
T |
|
| Q |
100 |
gatta |
104 |
Q |
| |
|
||||| |
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|
| T |
39465297 |
gatta |
39465301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 15996438 - 15996391
Alignment:
| Q |
226 |
gaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgca |
273 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||| ||||||||| |
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|
| T |
15996438 |
gaagaggcaatagaggaggctgaggctgcagaagcagatgcagatgca |
15996391 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 39465325 - 39465381
Alignment:
| Q |
189 |
agcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggc |
245 |
Q |
| |
|
||||||| |||||| |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
39465325 |
agcagttactgaagtggaagccgccactacggaagctgaagaggcaacaaaggaggc |
39465381 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 12082591 - 12082745
Alignment:
| Q |
119 |
ctgagatagacttggaattggaaaagttaaagtccatgtctttacaagaggtaatcacatgtgctgctcaagcagttgctgaagcagaagccgccatggc |
218 |
Q |
| |
|
||||||| || || ||||| ||||| ||| |||||||||| |||||||| | | ||| |||||||| ||||||||||||||| |||||| |||||| |
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|
| T |
12082591 |
ctgagatcgatttagaattagaaaaaataaggtccatgtctgcacaagaggcagccgcatatgctgctcgagcagttgctgaagcggaagccctcatggc |
12082690 |
T |
|
| Q |
219 |
agaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgca |
273 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
12082691 |
ggaggctgaagaggcaacaaaggaggcagaggctgcagaagcggaggcagatgca |
12082745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 12082524 - 12082594
Alignment:
| Q |
25 |
ttattggaagggaggcagaaagcctctattaaatctgacagtggtgggggcaatatccctacaaagtctga |
95 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||| | |||| | || | ||||||||||||| |||||||| |
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| T |
12082524 |
ttattggaagggaggcaaaaaggctctatgaaattttacagggatgagagcaatatccctactaagtctga |
12082594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0883 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0883
Description:
Target: scaffold0883; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 4722 - 4609
Alignment:
| Q |
180 |
tgctgctcaagcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgcagcggca |
279 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||| || |||| |||||| | | |
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|
| T |
4722 |
tgctgctcgagcagtcgctgatgcagaagccgccatagcggaagctgaagaggcagctaaggaggcagaggctgcagaagcggatgcagctgcagcagaa |
4623 |
T |
|
| Q |
280 |
gctattgcaaaagc |
293 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
4622 |
gcttttgcagaagc |
4609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 48515 - 48402
Alignment:
| Q |
180 |
tgctgctcaagcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgcagcggca |
279 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||| || |||| |||||| | | |
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|
| T |
48515 |
tgctgctcgagcagtcgctgatgcagaagccgccatagcggaagctgaagaggcagctaaggaggcagaggctgcagaagcggatgcagctgcagcagaa |
48416 |
T |
|
| Q |
280 |
gctattgcaaaagc |
293 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
48415 |
gcttttgcagaagc |
48402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 23304 - 23200
Alignment:
| Q |
1 |
agaggaggatacccacccatgttattattggaagggaggcagaaagcctc-tattaaatctgacagtggtgggggcaatatccctacaaagtctgacata |
99 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||| ||| ||||||||| ||| |||| |||||| | || | ||||||||||||| || ||||| || |
|
|
| T |
23304 |
agaggaagacaccaacccatgttattattggaaggggggcggaaagcctcatatgaaatttgacagggctgagagcaatatccctacgaattctgagtta |
23205 |
T |
|
| Q |
100 |
gatta |
104 |
Q |
| |
|
||||| |
|
|
| T |
23204 |
gatta |
23200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 23176 - 23120
Alignment:
| Q |
189 |
agcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggc |
245 |
Q |
| |
|
||||||| |||||| |||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
23176 |
agcagttactgaagtggaagccgccactacggaagctgaagaggcaacaaaggaggc |
23120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 20150104 - 20150201
Alignment:
| Q |
175 |
acatgtgctgctcaagcagttgctgaagcagaagccgccatggcagaagctgaagaggcaacaaaggaggcagaggctgcagaagcagaagcagatgc |
272 |
Q |
| |
|
|||| ||||||| ||| |||||| |||| ||||||||||| || ||||||||||||||||||||||||| | | |||||||||| || |||||||| |
|
|
| T |
20150104 |
acatatgctgctggagctgttgctaaagcggaagccgccattgcggaagctgaagaggcaacaaaggaggtactgactgcagaagcggatgcagatgc |
20150201 |
T |
|
Back To:
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