View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17581_low_14 (Length: 382)

Name: NF17581_low_14
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17581_low_14
NF17581_low_14
[»] chr3 (5 HSPs)
chr3 (157-372)||(43788553-43788768)
chr3 (1-161)||(43788865-43789026)
chr3 (74-161)||(20383504-20383591)
chr3 (117-161)||(8560026-8560070)
chr3 (92-161)||(4221349-4221418)
[»] chr7 (5 HSPs)
chr7 (74-161)||(7356177-7356264)
chr7 (74-161)||(34535207-34535294)
chr7 (77-154)||(47641864-47641941)
chr7 (90-161)||(21510266-21510337)
chr7 (129-161)||(27348233-27348265)
[»] chr4 (4 HSPs)
chr4 (74-161)||(53436547-53436634)
chr4 (108-161)||(37818677-37818730)
chr4 (77-161)||(35309425-35309511)
chr4 (113-161)||(37986934-37986982)
[»] chr1 (3 HSPs)
chr1 (74-161)||(10778414-10778501)
chr1 (91-152)||(15554468-15554529)
chr1 (2-75)||(10778228-10778302)
[»] chr5 (2 HSPs)
chr5 (77-161)||(29986713-29986797)
chr5 (78-161)||(38054283-38054366)
[»] chr6 (2 HSPs)
chr6 (78-161)||(16125097-16125180)
chr6 (113-161)||(20612966-20613014)
[»] chr8 (3 HSPs)
chr8 (77-161)||(35396523-35396607)
chr8 (96-161)||(35470469-35470536)
chr8 (39-75)||(35470432-35470468)
[»] chr2 (1 HSPs)
chr2 (77-161)||(12060043-12060127)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 157 - 372
Target Start/End: Complemental strand, 43788768 - 43788553
Alignment:
Q  157 ctccggtgagaaaatatctgatgctgtcggtgaaaaagtctctggtgggaaagtatacgatggtgttgacggcaatggcactagtgaaaaattctccgac 256  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  43788768 ctccggtgagaaaatatatgatgttgtcggtgaaaaagtctctggtgagaaagtatacaatggtgttgacggcaatgacactagtgaaaaattttccgac 43788669  T
Q  257 gatattggcggcaatgtagacgagtccggcaacaagattccaggaacttgacccatttgcacgccttcatccaacatctgcatcatatcatgatctctat 356  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43788668 gatattggcggcaatgtagacgagtccgacaacaagattccaggaacttgacccatttgcacgccttcatccaacatctgcatcatatcatgatctctat 43788569  T
Q  357 tccaagaaaatctctg 372  Q
    ||||||||||||||||    
T  43788568 tccaagaaaatctctg 43788553  T

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Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 43789026 - 43788865
Alignment:
Q  1 cagtaagttctcagttgtcgcagtggtat-ctagtcctatagtcccccagcagtcgcgagttcgacactcatgccaggtgattatttctatctacttctt 99  Q
    |||||| |||||||||||||||| ||||  |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43789026 cagtaacttctcagttgtcgcagcggtaagctagtcttataatcccccagcagtcgcgagttcgacactcatgccaggtgattatttctatctacttctt 43788927  T
Q  100 gaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  43788926 gaaactgatttacatatatttcatggtggtttggcacccccaagaaatttactcaagatccg 43788865  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 20383591 - 20383504
Alignment:
Q  74 caggtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  20383591 caggtgattatttttatctattttttgaaactgatttagatatatttcatggtggtttggcacccccaataaaattactcaagatccg 20383504  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 8560070 - 8560026
Alignment:
Q  117 atttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  8560070 atttcatagtggtttggcacccccaacaaatttactcaagatccg 8560026  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 4221349 - 4221418
Alignment:
Q  92 tacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||||||||||| || | ||||||||||| |  ||||||||||||||||||||| | ||||| ||||    
T  4221349 tacttcttgaaactgtttaatatatatttcatagaagtttggcacccccaacaaattaattcaagatccg 4221418  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 7356177 - 7356264
Alignment:
Q  74 caggtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  7356177 caggtgattatttttatctatttcttgaaactgatttacatatatttcatggtggtttggcacccccaataaatttactcaagatccg 7356264  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 34535207 - 34535294
Alignment:
Q  74 caggtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  34535207 caggtgattatttttatctatttcttgaaactggtttacatatatttcatggtggtttggcacccccaataaatttactcaagatccg 34535294  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 47641941 - 47641864
Alignment:
Q  77 gtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactca 154  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  47641941 gtgattatttttatctatttcttgaaactgatttacatatatttcatgatggtttgacacccccaacaaatttactca 47641864  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 21510266 - 21510337
Alignment:
Q  90 tctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    |||||||||||||||   || | ||||||||||| |||||||| |||||||||||||| |||||||| ||||    
T  21510266 tctacttcttgaaaccatttaatatatatttcatagtggtttgacacccccaacaaatatactcaagatccg 21510337  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 27348233 - 27348265
Alignment:
Q  129 tttggcacccccaacaaatttactcaagctccg 161  Q
    |||||||||||||||||||||||||||| ||||    
T  27348233 tttggcacccccaacaaatttactcaagatccg 27348265  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 53436634 - 53436547
Alignment:
Q  74 caggtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||    
T  53436634 caggtgattatttttatctatttcttgaaactgatttacatatatttcatggtggtttggcacccctaataaatttactcaagatccg 53436547  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 37818730 - 37818677
Alignment:
Q  108 tttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  37818730 tttatatatatttcatagtggtttggcacccccaacaaatttactcaagatccg 37818677  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 35309511 - 35309425
Alignment:
Q  77 gtgattatttctatctacttcttgaaactgatttacat--atatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    |||||||||| ||| ||||| |||||||||||||||||  |||||| ||||||||||  |||| |||| ||||||||||||| ||||    
T  35309511 gtgattatttttatatactttttgaaactgatttacatatatattttatggtggtttaacacctccaataaatttactcaagatccg 35309425  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 37986982 - 37986934
Alignment:
Q  113 atatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||| |||||  ||||||||||||||| ||||||||||||| ||||    
T  37986982 atatattccatggaagtttggcacccccaaaaaatttactcaagatccg 37986934  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 10778414 - 10778501
Alignment:
Q  74 caggtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  10778414 caggtgattatttttatctatttcttgaaacggatttacatatatttcatggtagtttggcacccccaacaaatttactcaagatccg 10778501  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 15554529 - 15554468
Alignment:
Q  91 ctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttact 152  Q
    ||||||||||||| || || | |||||||||||  |||||||||||||||||||||||||||    
T  15554529 ctacttcttgaaattgtttaatatatatttcataatggtttggcacccccaacaaatttact 15554468  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 10778228 - 10778302
Alignment:
Q  2 agtaagttctcagttgtcgcagtggtat-ctagtcctatagtcccccagcagtcgcgagttcgacactcatgcca 75  Q
    ||||||||  |||||| ||||||||||  |||||| || ||||||||||  |||||||||||||||||| |||||    
T  10778228 agtaagtttacagttggcgcagtggtaagctagtcttacagtcccccagtggtcgcgagttcgacactcttgcca 10778302  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 29986713 - 29986797
Alignment:
Q  77 gtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  29986713 gtgattatttttatctactttttgaaactggtttacatatatttcatggtggtttggcacccccaataaatttactcaagatccg 29986797  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 38054283 - 38054366
Alignment:
Q  78 tgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  38054283 tgattatttttatctatttcttgaaacggatttacatatatttcatggtagtttggcatccccaacaaatttactcaagatccg 38054366  T

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Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 16125180 - 16125097
Alignment:
Q  78 tgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  16125180 tgattacttttatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccgataaatttactcaagatccg 16125097  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 20613014 - 20612966
Alignment:
Q  113 atatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    ||||||| |||||  ||||||||||||||| ||||||||||||| ||||    
T  20613014 atatattccatggaagtttggcacccccaaaaaatttactcaagatccg 20612966  T

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Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 35396523 - 35396607
Alignment:
Q  77 gtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| ||||||| ||||    
T  35396523 gtgattatttttatctacttcttgaaactgatttatatatatttgatggtggtttggcacccccaataaattcactcaagatccg 35396607  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 35470469 - 35470536
Alignment:
Q  96 tcttgaaactgatttacatatat--ttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    |||||||||||||||||||||||  || ||||||||||| ||||||||| ||||||||||||| ||||    
T  35470469 tcttgaaactgatttacatatatattttatggtggtttgacacccccaataaatttactcaagatccg 35470536  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 35470432 - 35470468
Alignment:
Q  39 tagtcccccagcagtcgcgagttcgacactcatgcca 75  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  35470432 tagtcccccagcggtcgcgagttcgacactcacgcca 35470468  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 12060043 - 12060127
Alignment:
Q  77 gtgattatttctatctacttcttgaaactgatttacatatatttcatggtggtttggcacccccaacaaatttactcaagctccg 161  Q
    |||||||||| |||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||| ||||||| ||||    
T  12060043 gtgattatttttatctatttcttgaaattgatttatatatatttgatggtggtttggcacccccaataaattcactcaagatccg 12060127  T

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