View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_17 (Length: 358)
Name: NF17581_low_17
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 42302368 - 42302012
Alignment:
| Q |
1 |
ctagtgaggatcatagtaatttagatcaaagtctttgagtctaatcttcactacaatcagggaagcttgtcctgtaaagcaaacaatactaaatcaaata |
100 |
Q |
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| T |
42302368 |
ctagtgaggatcatagtaatttagatcaaagtctttgagtctaatcttcactacaatcagggaagcttgtcctgtaaagcaaacaatactagatcaaata |
42302269 |
T |
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| Q |
101 |
gtgaaatgaatgtctatgtactagttgatctaattgttgtatttgtactggtttatctaaaattgtttgctttagagacagtgcttcattgtccttatag |
200 |
Q |
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| T |
42302268 |
gtgaaatgaatgtctatgtactagttgatctaattgttgtatttgtactggttgatctaaaattgtttgctttagagacggtgcttcattgtccttatag |
42302169 |
T |
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| Q |
201 |
tcaaagattagactttgaaatactttgatcaaaattgaatataaggatatttttcaacatattttaatgagtccgacatgtgttattaaactcataagtg |
300 |
Q |
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| T |
42302168 |
tc-aagattagactttgaaatactttgatcaaaattgaatataaggatatttttcaacatattttaatgagtccgacatgtgttattaaactcacaagtg |
42302070 |
T |
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| Q |
301 |
atgtaacaaaagaatattggannnnnnnaaagataaacattattgaatatttataaaa |
358 |
Q |
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| T |
42302069 |
atgtaacaaaagaatattggatttttttaaagataaacattattgaatatttataaaa |
42302012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 42301667 - 42301751
Alignment:
| Q |
236 |
tgaatataaggatatttttcaacatattttaatgagtccgacatgtgttattaaactcataagtgatgtaacaaaagaatattgga |
321 |
Q |
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| T |
42301667 |
tgaatataaggatatttttcaagataatttaataagtttgacatgtgttattaaattcatatgtaatgtaacagaa-aatattgga |
42301751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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