View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_2 (Length: 679)
Name: NF17581_low_2
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 398 - 664
Target Start/End: Original strand, 3809460 - 3809726
Alignment:
| Q |
398 |
atagaaaggccatatctcatttgttgttgagcttgagcgacggacatggaaaactacacagtccaggggtaatatcacgagtagctttactatacgatgt |
497 |
Q |
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| T |
3809460 |
atagaaaggccatatctcatttgttgttgagcttgagcgacggacatggaaaactacacagtccaggggtaatatcccgagcagctttactatacgatgt |
3809559 |
T |
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| Q |
498 |
tcatagaagtatcatttttcgtatatggaaacaagtaatggagactggtaatgcttatcataagaaaacacgctgtggaaggaaacgtgttcagttagat |
597 |
Q |
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| T |
3809560 |
tcatagaagtatcatttatcgtatatggaaacaagtaatggagactggtaatgcttatcataagaaaaaacgatgtggaaggaaatgtgttcagttagat |
3809659 |
T |
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| Q |
598 |
ttggagttaatgcgtcaagttccattgtcaaaacgatctacctttcgatctctatctcttgctctga |
664 |
Q |
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| T |
3809660 |
ttggagttaatgcgtcaagttccattgtcaaaacgatctacctttcgatctctatctcttgctctga |
3809726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 136 - 395
Target Start/End: Original strand, 3809152 - 3809412
Alignment:
| Q |
136 |
atttgcttgaatgacacattatgcataaagttgaagatgatcagtatgtgccattccctgaagcaaatgactttcaacaattccatatagctacaggtac |
235 |
Q |
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| T |
3809152 |
atttgcttgaatgacacat-atgcataaagttgaagatgatcagtatgtgccattccctaaagcaaatgactttcaacaattccatatagctacatgtac |
3809250 |
T |
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| Q |
236 |
atgtttaaagtagaatgacacatattcttcccttttttgtgccctgttatttttagttgat--atatcaattgaatttcgata-ttttttccctttaatc |
332 |
Q |
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| T |
3809251 |
atgtttaaagtagaatgacacatattcttcccttttttgtg-cttgttatttttagttgataaatatcaattgaatttcgatatttttttccctataatc |
3809349 |
T |
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| Q |
333 |
ttgtcatgcagactcgttgacaactgaaggaacttccaaaaaacgtcgttttctgaagaatga |
395 |
Q |
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| T |
3809350 |
ttgtcatgcagactcgttgacaactgaaggaacttccaaaaaacgtcgttttctgaagaatga |
3809412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 3805104 - 3805141
Alignment:
| Q |
18 |
acagcaccgattctcgctcaaatgaaaatggtgtgtaa |
55 |
Q |
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| T |
3805104 |
acagcaccgattcttgctcaaatgaaaatggtgtgtaa |
3805141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 459
Target Start/End: Original strand, 3809421 - 3809456
Alignment:
| Q |
424 |
ttgagcttgagcgacggacatggaaaactacacagt |
459 |
Q |
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| T |
3809421 |
ttgagcttgagcgatggacatggaaaactacacagt |
3809456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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