View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17581_low_20 (Length: 302)

Name: NF17581_low_20
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17581_low_20
NF17581_low_20
[»] chr4 (2 HSPs)
chr4 (15-294)||(7114938-7115218)
chr4 (46-218)||(38092895-38093068)
[»] scaffold0044 (1 HSPs)
scaffold0044 (46-228)||(43066-43252)
[»] chr5 (2 HSPs)
chr5 (41-142)||(11239374-11239475)
chr5 (44-134)||(36517529-36517619)
[»] chr3 (5 HSPs)
chr3 (84-215)||(42773709-42773840)
chr3 (21-215)||(1547763-1547957)
chr3 (41-231)||(52612732-52612922)
chr3 (94-141)||(1201603-1201650)
chr3 (41-79)||(50423479-50423517)
[»] chr2 (3 HSPs)
chr2 (29-221)||(4636654-4636846)
chr2 (23-198)||(36251238-36251413)
chr2 (46-129)||(38785020-38785103)
[»] chr8 (3 HSPs)
chr8 (51-198)||(5201077-5201224)
chr8 (22-199)||(27220397-27220574)
chr8 (62-215)||(32699522-32699675)
[»] chr7 (3 HSPs)
chr7 (21-215)||(39845039-39845233)
chr7 (21-111)||(20254809-20254899)
chr7 (80-159)||(3499387-3499466)
[»] chr6 (2 HSPs)
chr6 (41-143)||(2030778-2030880)
chr6 (94-141)||(19812681-19812728)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 7114938 - 7115218
Alignment:
Q  15 accatcacctcatcaaacaatcccgaggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7114938 accatcacctcatcaaacaatcccgaggacaccaacaccactcgtagaacatgcaagccgggatattaaatctccctaataaccacctccacgacataac 7115037  T
Q  115 cttgacctcctccactaacccatcccaccaagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatc 214  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7115038 cttgacctcctccactaactcatcccacctagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatc 7115137  T
Q  215 aacctcattcccttccgggnnnnnnngaatcttatatttggatcccgaacgtaatgccaacttccaa-attgtttgtctgt 294  Q
    ||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  7115138 aacctcattcccttccggatttttttgaatcttatatttggatcctgaacgtaatgccaacttccaatattgtttgtctgt 7115218  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 38092895 - 38093068
Alignment:
Q  46 ccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacccatcccaccaa 145  Q
    ||||||||| || |||||||| || ||||  ||||||||||||||||| |||||| |||| || |||||||| ||||||||||||||| ||||||||  |    
T  38092895 ccaacaccattcataaaacatacatgccgaaatattaaatctccctaataaccacttccatgatataaccttaacctcctccactaactcatcccacata 38092994  T
Q  146 g-ctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatcaacc 218  Q
    |  |||||| || |||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  38092995 gtttatctcgttattgaaattacaaccatttatcgtcctccaaatgacccaaatcacaacctcccaaatcaacc 38093068  T

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Target: scaffold0044 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 46 - 228
Target Start/End: Complemental strand, 43252 - 43066
Alignment:
Q  46 ccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacccatcccaccaa 145  Q
    ||||||||| || |||||||| || ||||| ||||||||||||||||| |||||| || | ||||||||||| ||||| ||||||||| ||||||||  |    
T  43252 ccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccacata 43153  T
Q  146 gctatctcattgttga----aaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatcaacctcattccctt 228  Q
    | |||||| || ||||    || ||||||||||| |||||| |||||| || ||||||||||||||||||||||||| || ||||||    
T  43152 gttatctcgttattgaaattaattacaaccatttatcgccccccaaatgacgcaaatcacaacctcccaaatcaaccgcaatccctt 43066  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 11239374 - 11239475
Alignment:
Q  41 ggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacccatccc 140  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||| ||||||||| |||| |||||| ||||||||||||||| ||||||    
T  11239374 ggacaccaacaccactcgtaatacatgcaagccggcacattaaatcttcctaacacccacctccaagacaaaaccttcacctcctccactaactcatccc 11239473  T
Q  141 ac 142  Q
    ||    
T  11239474 ac 11239475  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 36517619 - 36517529
Alignment:
Q  44 caccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacc 134  Q
    |||||||||||||| ||| |||| || ||||||| ||||||||||||||||| ||||||||| |||| ||| || ||||||||||||||||    
T  36517619 caccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttcacctcctccactaacc 36517529  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 42773709 - 42773840
Alignment:
Q  84 atctccctaacaaccacctccacgacataaccttgacctcctccactaacccatcccaccaagctatctcattgttgaaaatacaaccatttctcgccct 183  Q
    |||||||||||||||||||||| ||||  || || ||||||||||||||| || |||| |  |||||  ||||||||||||| ||  ||||||| ||| |    
T  42773709 atctccctaacaaccacctccaagacaacactttaacctcctccactaactcaacccatcccgctatgacattgttgaaaatgcactcatttctagcctt 42773808  T
Q  184 ccaaataacccaaatcacaacctcccaaatca 215  Q
    |||||| |||||||||||  ||||||||||||    
T  42773809 ccaaattacccaaatcacggcctcccaaatca 42773840  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 1547957 - 1547763
Alignment:
Q  21 acctcatcaaacaatcccgaggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgac 120  Q
    |||||| |||||||||  | || ||||||| ||| || |||||||| || ||||| | ||| ||||| ||||| | | |||| || ||||| || || ||    
T  1547957 acctcaacaaacaatcttgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaaccttcaagacatcacttttac 1547858  T
Q  121 ctcctccactaacccatcccaccaagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatca 215  Q
    ||||||||| ||| |||||||||  ||  | ||||| || ||||| |  |||||||||||| ||||||| |||||||| || |||||||| ||||    
T  1547857 ctcctccaccaactcatcccacctcgcattttcattattaaaaatccggccatttctcgccttccaaatcacccaaattaccacctcccatatca 1547763  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 52612732 - 52612922
Alignment:
Q  41 ggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacccatccc 140  Q
    |||||||||| |||||| |||||||| ||||||||  |   | |||| || |  ||||||||||| ||||  || || |||| |||||| | | ||||||    
T  52612732 ggacaccaactccactcataaaacatacaagccggtgttgaagatctaccaagtaaccacctccatgacaacactttcaccttctccacaagctcatccc 52612831  T
Q  141 accaagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatcaacctcattcccttccg 231  Q
    |   |||  ||||||| |||||||||| | |||| |||||  |||| | |||||||||||| ||||||||||||| ||||| |||||||||    
T  52612832 atggagcattctcattattgaaaatacgatcattcctcgctttccacaaaacccaaatcaccacctcccaaatcatcctcaatcccttccg 52612922  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 1201603 - 1201650
Alignment:
Q  94 caaccacctccacgacataaccttgacctcctccactaacccatccca 141  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  1201603 caaccacctccacgacaaaaccttaacctcctccactaactcatccca 1201650  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 50423517 - 50423479
Alignment:
Q  41 ggacaccaacaccactcgtaaaacatgcaagccgggata 79  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  50423517 ggacaccaactccactcataaaacatgcaagccgggata 50423479  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 4636654 - 4636846
Alignment:
Q  29 aaacaatcccgaggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctcca 128  Q
    ||||| || ||||||||||||| |||||| ||||||||||||||||| ||  |   ||| || |  | ||||||||||||||  ||||| ||| ||||||    
T  4636654 aaacattcgcgaggacaccaactccactcataaaacatgcaagccggaattgtggttctaccgagaatccacctccacgacaacaccttcaccgcctcca 4636753  T
Q  129 ctaacccatcccaccaagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatcaacctca 221  Q
     |||| | |||||| |||| | |||||| ||||||||||  |||||||| ||  |||| | ||||||||| || ||||||||||||| |||||    
T  4636754 ttaactcctcccacgaagcaacctcattattgaaaatacgcccatttctagctttccacaaaacccaaattaccacctcccaaatcatcctca 4636846  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 36251413 - 36251238
Alignment:
Q  23 ctcatcaaacaatcccgaggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacct 122  Q
    ||||| ||||| ||| || ||||||||| ||| ||||| ||||||||||||||  |||| || |  ||||||||||| ||||||||||| ||| | ||||    
T  36251413 ctcattaaacactcctgatgacaccaactccattcgtagaacatgcaagccggagtattgaaacggcctaacaaccatctccacgacatcaccgtaacct 36251314  T
Q  123 cctccactaacccatcccaccaagctatct-cattgttgaaaatacaaccatttctcgccctccaaataacccaaat 198  Q
    | ||||||||  | ||||||| ||| |||| ||||||| ||||||   |||||||| ||  ||||||||||||||||    
T  36251313 catccactaattcctcccacctagc-atctgcattgttaaaaataactccatttctagctttccaaataacccaaat 36251238  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 38785103 - 38785020
Alignment:
Q  46 ccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccac 129  Q
    |||||||||||| ||  |||||||| | || || |||||||| |||||||||| |||||| |||| ||| || |||||||||||    
T  38785103 ccaacaccactcatagtacatgcaaactggaatgttaaatcttcctaacaaccgcctccaagacaaaacattcacctcctccac 38785020  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 198
Target Start/End: Original strand, 5201077 - 5201224
Alignment:
Q  51 accactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacccatcccaccaagctat 150  Q
    |||||||||| ||||| || || | | |||||| ||| ||||||||||| |||||| |||  ||||| ||||||||||||||| |||||||||  || ||    
T  5201077 accactcgtagaacatacatgctgcggtattaagtctacctaacaaccatctccacaacaacaccttaacctcctccactaactcatcccaccttgcaat 5201176  T
Q  151 ctcattgttgaaaatacaaccatttctcgccctccaaataacccaaat 198  Q
      |||| || |||||| | |||||||||||| ||||||| ||||||||    
T  5201177 aacattattaaaaataaacccatttctcgccttccaaatgacccaaat 5201224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 27220574 - 27220397
Alignment:
Q  22 cctcatcaaacaatcccgaggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacc 121  Q
    |||||||||||| ||||| |||||||||  |||||| ||| |||  || || || ||||||||||| ||||| | ||| ||||| ||||  ||||| |||    
T  27220574 cctcatcaaacagtcccggggacaccaagtccactcataatacaaacatgctggaatattaaatcttcctaaaagccatctccaagacaccaccttcacc 27220475  T
Q  122 tcctccactaacccatcccaccaagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatc 199  Q
    |||||||||||| | |||||| | ||  ||||||  ||||||||||   ||||||| || |||||||| | |||||||    
T  27220474 tcctccactaactcgtcccacaatgcgttctcatcattgaaaatacggtcatttcttgctctccaaattatccaaatc 27220397  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 32699522 - 32699675
Alignment:
Q  62 aacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacccatcccaccaagctatctcattgttga 161  Q
    ||||| || ||||| || || ||||| |||||||||||||| || ||||| ||||| |||||||||| |||  |||||||||  |   ||||||| || |    
T  32699522 aacatacatgccggaatgttgaatcttcctaacaaccacctacaagacatcaccttaacctcctccattaagtcatcccaccttgtattctcattattaa 32699621  T
Q  162 aaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatca 215  Q
    |||| || || ||||| ||| ||||||| ||||||||||||| ||||| |||||    
T  32699622 aaatgcacccgtttcttgccttccaaattacccaaatcacaagctcccgaatca 32699675  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 39845233 - 39845039
Alignment:
Q  21 acctcatcaaacaatcccgaggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgac 120  Q
    |||||| ||||||||| || || ||||||| ||| || |||||||| || ||||| | ||| ||||| ||||| | | ||||||| ||||| || || ||    
T  39845233 acctcaacaaacaatctcgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacatcacttttac 39845134  T
Q  121 ctcctccactaacccatcccaccaagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatca 215  Q
    ||||||||| ||| |||||||||  ||  | ||||| || ||||| |   ||||||||||| ||||||| |||||||| || |||||||| ||||    
T  39845133 ctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgccttccaaatcacccaaattaccacctcccatatca 39845039  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 20254809 - 20254899
Alignment:
Q  21 acctcatcaaacaatcccgaggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacat 111  Q
    ||||||||||| |||| || |||||||||||||||||||| || || ||||| ||  | || ||||| |||||||||||||| || |||||    
T  20254809 acctcatcaaataatctcgtggacaccaacaccactcgtagaaaatacaagctggattgttgaatctacctaacaaccaccttcaagacat 20254899  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 3499387 - 3499466
Alignment:
Q  80 ttaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacccatcccaccaagctatctcattgtt 159  Q
    ||||||||||| |||||| ||||||| ||||| ||||||| ||||| ||||| | ||||| |||  || |||||||||||    
T  3499387 ttaaatctccccaacaacgacctccaagacatcaccttgatctccttcactagctcatcctacctcgcaatctcattgtt 3499466  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 2030778 - 2030880
Alignment:
Q  41 ggacaccaacaccactcgtaaaacatgcaagccgggatattaaatctccctaacaaccacctccacgacataaccttgacctcctccactaacccatccc 140  Q
    ||||||||  || ||||||||||||| || |||||   ||||||||| ||||||||||| |||||||| |  ||||| ||||||||||||||  ||||||    
T  2030778 ggacaccatgactactcgtaaaacatacacgccggagcattaaatctacctaacaaccatctccacgataacacctttacctcctccactaattcatccc 2030877  T
Q  141 acc 143  Q
    |||    
T  2030878 acc 2030880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 19812681 - 19812728
Alignment:
Q  94 caaccacctccacgacataaccttgacctcctccactaacccatccca 141  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  19812681 caaccacctccacgacaaaaccttaacctcctccactaactcatccca 19812728  T

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