View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_21 (Length: 293)
Name: NF17581_low_21
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 1138875 - 1139149
Alignment:
| Q |
1 |
acactgttgcaatagattatcccaccaattttgaatatgcaactaaagcataccaaagaaggaaggtaaaattcgaagtcatatgttagcaaccatattc |
100 |
Q |
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| T |
1138875 |
acactgttgcaatagattatcccgccaatattgaatatgcaactaaagcatacctaagaaggaaggtaaaatttgaagtcatatgttagcaaccatattt |
1138974 |
T |
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| Q |
101 |
tttgcgtaaccttttattccatttcaatcatatgccacgttttgaactgagtaatgcgtgatattatatcatagacttagcactatttttgaaatcaatg |
200 |
Q |
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| T |
1138975 |
tgtgcgtagccttttattccatttcaatcgtatgccactttttgaactgagtaatgcgtgatattatatcatagacttagcactatttttgaaatcaatg |
1139074 |
T |
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| Q |
201 |
actgaattggaatcacttataccaaccaagtatgacaccatatagatattaaaaaatcaagtgtaaactcaattg |
275 |
Q |
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| T |
1139075 |
actgaattggaatcacttataccaaccaagtatgacaccatatagatattaaaaaatcaagcgtaaactcaattg |
1139149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 48119173 - 48119056
Alignment:
| Q |
56 |
aagaaggaaggtaaaat-tcgaagtcatatgttagcaaccatattctttgcgtaaccttttattccatttcaatcatatgccacgttttgaactgagtaa |
154 |
Q |
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| T |
48119173 |
aagaaggaaggtaaaaagtcgaagtcatatgttagaagccatattctttatgtggccttttagttcatctcaattgtatggcacttgttgaactgagtaa |
48119074 |
T |
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| Q |
155 |
tgcgtgatattatatcat |
172 |
Q |
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| T |
48119073 |
tgcatgatattatatcat |
48119056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 249
Target Start/End: Original strand, 10207421 - 10207575
Alignment:
| Q |
93 |
ccatattctttgcgtaaccttttattccatttcaatcatatgccacgttttgaactgagtaatgcgtgatattatatcat-agacttagcacta-ttttt |
190 |
Q |
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||||||| ||| ||| ||||||| | ||| ||||| |||| ||| | |||||||||||||||| ||||||||||| || ||||||| ||| ||||| |
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| T |
10207421 |
ccatattttttatgtagccttttagttcatctcaattgtatgtcacttgttgaactgagtaatgcatgatattatataatgagacttactgctacttttt |
10207520 |
T |
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| Q |
191 |
gaaatcaatgactgaattggaatcacttataccaaccaagtatgacaccatatagatat |
249 |
Q |
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| T |
10207521 |
gaaatcaatgaccgaaatgaaatcactta----aaccaagcatgacaccatatagatat |
10207575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 41475416 - 41475368
Alignment:
| Q |
56 |
aagaaggaaggtaaaat-tcgaagtcatatgttagcaaccatattcttt |
103 |
Q |
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| T |
41475416 |
aagaaggaaggtaaaaagtcgaagtcatatgttagaagccatattcttt |
41475368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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