View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17581_low_25 (Length: 285)
Name: NF17581_low_25
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_25 |
 | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 14753809 - 14753555
Alignment:
| Q |
19 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcattggaaaaagttaaagaagaaattgatctccacattggcaaagaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14753809 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcattggaaaaagttaaagaagaaattgatcgccacattggcaaagaga |
14753710 |
T |
|
| Q |
119 |
gattatgcatcaccgagtccgatattaacaagttggtatatcttcaagctgttgtcaaagaaacactaaggttgtatccagcatcgcctctttctggaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14753709 |
gattatgcatcaccgagtccgatattaacaagttagtataccttcaagctgttgtcaaagaaacactaaggttgtatccagcatcgcctctttctggaat |
14753610 |
T |
|
| Q |
219 |
tcgcgaattcagagaagattgcaacattggtggctaccatgtgaagaaaagaact |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14753609 |
tcgcgaattcagagaagattgcaacattggtggctaccatgtgaagaaaggaact |
14753555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 4 - 273
Target Start/End: Complemental strand, 14711753 - 14711484
Alignment:
| Q |
4 |
ggagcagcagagaccagcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcattggaaaaagttaaagaagaaattgatctcc |
103 |
Q |
| |
|
|||||| |||| || |||||||||||||||| |||||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
14711753 |
ggagcaacagacactagcagtgttacacacacatgggctttgtgcctattattgaacaatcctcatacactggaaaaagttaaagaagaaattgatctcc |
14711654 |
T |
|
| Q |
104 |
acattggcaaagagagattatgcatcaccgagtccgatattaacaagttggtatatcttcaagctgttgtcaaagaaacactaaggttgtatccagcatc |
203 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||| | ||||||||||| |
|
|
| T |
14711653 |
acattggaaaagagagactatgcattcttgagtcagatattaacaagttggtataccttcaagcagttgtcaaagaaacgctaagactttatccagcatc |
14711554 |
T |
|
| Q |
204 |
gcctctttctggaattcgcgaattcagagaagattgcaacattggtggctaccatgtgaagaaaagaact |
273 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||| | |||||||||||| |||| |||||| ||||| |
|
|
| T |
14711553 |
acctctttcaggaatacgagaatttagagaagattgccagattggtggctacgatgtaaagaaaggaact |
14711484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 2368801 - 2368855
Alignment:
| Q |
146 |
acaagttggtatatcttcaagctgttgtcaaagaaacactaaggttgtatccagc |
200 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||| || |||||||| |
|
|
| T |
2368801 |
acaagttggtgtatcttcaagccattgtcaaagaaaccctaagattatatccagc |
2368855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 2261550 - 2261501
Alignment:
| Q |
148 |
aagttggtatatcttcaagctgttgtcaaagaaacactaaggttgtatcc |
197 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||||| |||||||| |
|
|
| T |
2261550 |
aagttggtatatcttcaagcaatagtcaaagaaaccctaagattgtatcc |
2261501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 254 - 509
Alignment:
| Q |
19 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcatt-ggaaaaagttaaagaagaaattgatctccacattggcaaagag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
254 |
agcagtgttacacacatatgggcattgtgtttactattgaacaatcctcatgcattaggaaaaagttaaagaagaaattgatcgccacattggcaaagag |
353 |
T |
|
| Q |
118 |
agattatgcatcaccgagtccgatattaacaagttggtatatcttcaagctgttgtcaaagaaacactaaggttgtatccagcatcgcctctttctggaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
354 |
agattatgcatcaccgagtccgatattaacaagttagtataccttcaagctgttgtcaaagaaacactaaggttgtatccagcatcgcctctttctggaa |
453 |
T |
|
| Q |
218 |
ttcgcgaattcagagaagattgcaacattggtggctaccatgtgaagaaaagaact |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
454 |
ttcgcgaattcagagaagattgcaacattggtggctaccatgtgaagaaaggaact |
509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University