View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_27 (Length: 276)
Name: NF17581_low_27
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 48059226 - 48059484
Alignment:
| Q |
16 |
aagaagaccaagattacaaaacttcacagattcatgtttgatgagttgaaaatagtattttcatattggtgtactacattctccaaaggagacgatgnnn |
115 |
Q |
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| T |
48059226 |
aagaagaccaagattacaaaacttcacaaattcatgtttgatgagttgaaaatagtattttcatattggtgtactacattctccaaaggaggcgatgaaa |
48059325 |
T |
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| Q |
116 |
nnnntatatgtcattactacaataacatgctgattttcgcatacacatactcatcctttctgaagccactttacattgagtaatactaatgcatgatgat |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48059326 |
aaa--atacgtcattactacaataacatgctgattttcgcatacacatactcatcctttctgaagccactttacattgagtaatactaatgcatgatgat |
48059423 |
T |
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| Q |
216 |
aacaggtactagttagtagtgtgtagtgacactgatatgacttgactactggttggatttg |
276 |
Q |
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| T |
48059424 |
aacaggtactagttagtagtgtgtagtgacacggatatgatatgactactggttggatttg |
48059484 |
T |
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