View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_3 (Length: 627)
Name: NF17581_low_3
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 617
Target Start/End: Complemental strand, 8172569 - 8171967
Alignment:
| Q |
17 |
acatacatatataactaatatatatttttt-catttacaagccaagattgtaaattacagaccacaccaaataacgagtcaatacaaagatacaacagaa |
115 |
Q |
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| T |
8172569 |
acatgcatatataactaatatatatttttttcatttacaagccaagattgtaaattacagaccacaacaaataacgagtcaatacaaagatacaacagaa |
8172470 |
T |
|
| Q |
116 |
tat-aaattgctcctgctcaattcttcaagacctgtcaattaaaatttaccataagtgattgaaatatattctcctaagtactacttttaacatacttac |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172469 |
tatcaaattgctcctgctcaattcttcaagacctgtcaattaaaatttaccataagtgattgaaatatattctcctaagtactacttttaacatacttac |
8172370 |
T |
|
| Q |
215 |
attattagataaatttctttaaactccacatgaattttatctaatcatacaaaatatgttaaagagtatgttgtcagcatcatcgatcaatttacgactt |
314 |
Q |
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| T |
8172369 |
attattagataaatttctttaaactccacatgaattttatctaataatacaagatatgttaaagagtatgttgtcagcatcatcgatcaatttacgactt |
8172270 |
T |
|
| Q |
315 |
aaacctcgacatgtattttcttattaggagaggtgaccctaaaaatatgttcctctccggtgcaattatctacttgaacaatccaattactcttattcct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172269 |
aaacctcgacatgtattttcttattaggagaggtgaccctaaaaatatgttcctctccggtgcaattatctacttgaacaatccaattactcttattcct |
8172170 |
T |
|
| Q |
415 |
ttggacaaccatatcataatctttcttcacattaagatcaattttggtcacaagcaacccttctcctataggtaaatatgttgccctaaattgtctccat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8172169 |
ttggacaaccatatcataatctttcttcacattaagatcaattttggtcacaagcaacccttctcctataggtaaatatgttgccctaaattgtctccat |
8172070 |
T |
|
| Q |
515 |
ctcaatgccctatgcctaacattataaccaaccacaagtgctccatttttgttggcacctttaaatgctgctaaaagtacttctcttgcattattcatct |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
8172069 |
ctcaatgccctatgcctaacattataaccaaccacaagtgctccatctttattggcacctttaaatgctgctagaaaaacttctcttgcattattcatgt |
8171970 |
T |
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| Q |
615 |
cac |
617 |
Q |
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| T |
8171969 |
cac |
8171967 |
T |
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