View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_33 (Length: 240)
Name: NF17581_low_33
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 48997317 - 48997539
Alignment:
| Q |
18 |
attacatatggctatacgtagaccccacgatgagcatcatgtgtggttgtgcgcacgtactacgaggaaaacacaattgtcaattgattcttttttgcca |
117 |
Q |
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| T |
48997317 |
attacatatggctatacgtagaccccacgatgaacatcatgtgtggttgtgcgcacgtactacgaggaaaacacaattgtcaattgattctttttttcca |
48997416 |
T |
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| Q |
118 |
ctaactgtttatctttccattcaaacaaatctaatttaccatatagatctgtgacctgttaatagaaaactaaatccagtaaactagatcatctggcatt |
217 |
Q |
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| T |
48997417 |
ctaactgttcatctttccattcaaacaaatctaatttaccatatagatctgtgacctgttaatagaaaactaaatccagtaaactagatcatgtggcatt |
48997516 |
T |
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| Q |
218 |
aaataaataattaatgggtaatt |
240 |
Q |
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| T |
48997517 |
aaataaataattaatgggtaatt |
48997539 |
T |
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