View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_35 (Length: 238)
Name: NF17581_low_35
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_35 |
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| [»] scaffold0408 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: scaffold0408 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 968 - 748
Alignment:
| Q |
18 |
attcattcaaattaaaaggtccaaatttggtaacattgtttcacaactattggaagatacaataagagactcataaccttaagcatgaatcatatgctag |
117 |
Q |
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| T |
968 |
attcattcaaattaaaaggtccaaatttggtaacattgtttcacaactattggaagatacaataagagactcataaccttaagcatgaatcatatgctag |
869 |
T |
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| Q |
118 |
tacatatgattacatggtttcataataattgaaagacaaacgaggtttgacaaggacttcaagaggagtaactttgatgtttgtggtttccacaacagca |
217 |
Q |
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| T |
868 |
tacatatgattacatggtttcataataattgaaaggcaaacgaggtttaatgaggacttcaagaggagtaactttgatgttggttgtttccacaacagca |
769 |
T |
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| Q |
218 |
gtcatatcaattggctcactt |
238 |
Q |
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| T |
768 |
gtcatatcaattggctcactt |
748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 14753095 - 14753315
Alignment:
| Q |
18 |
attcattcaaattaaaaggtccaaatttggtaacattgtttcacaactattggaagatacaataagagactcataaccttaagcatgaatcatatgctag |
117 |
Q |
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| T |
14753095 |
attcattcaaattaaaaggtccaaatttggtaacattgtttcacaactattggaagatacaataagagactcataaccttaagcatgaatcatatgctag |
14753194 |
T |
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| Q |
118 |
tacatatgattacatggtttcataataattgaaagacaaacgaggtttgacaaggacttcaagaggagtaactttgatgtttgtggtttccacaacagca |
217 |
Q |
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| T |
14753195 |
tacatatgattacatggtttcataataattgaaaggcaaacgaggtttaatgaggacttcaagaggagtaactttgatgttggttgtttccacaacagca |
14753294 |
T |
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| Q |
218 |
gtcatatcaattggctcactt |
238 |
Q |
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| T |
14753295 |
gtcatatcaattggctcactt |
14753315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 14711130 - 14711241
Alignment:
| Q |
124 |
tgattacatggtttcataataattgaaagacaaacgaggtttgacaaggacttcaagaggagtaactttgatgtttgtggtttccacaacagcagtcata |
223 |
Q |
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| T |
14711130 |
tgattacatggattaataataattgggagacaaacgaggtttgatgagaacttcaagaggagtaactttgatgttggttgtttccacaacagccgtcata |
14711229 |
T |
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| Q |
224 |
tcaattggctca |
235 |
Q |
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| T |
14711230 |
tcaattggctca |
14711241 |
T |
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