View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_36 (Length: 235)
Name: NF17581_low_36
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 33028551 - 33028773
Alignment:
| Q |
2 |
tatatatatgtattgcactcttgtaactcaattcaatgttaatttacaattcttcaatattgttgaagttctctag--tatgcagttgaaaagatattcg |
99 |
Q |
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| T |
33028551 |
tatatacatgtattgcactcttgtaactcaattcaatgttaatttacaattcttcaatattgttgaagttctctataatatgcagttgaaaagatattcg |
33028650 |
T |
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| Q |
100 |
atgaaaaactcaaaattatcaacttgtgtgttcatattctatgacaaatttgcagttgtagaatcggaatgaaaatgcaaaaaacactattctatgaaaa |
199 |
Q |
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| T |
33028651 |
atgaaaaactcaaaattatcaacttgtgtgttcatattctatggcaaatttgcagttgtagaatcggaatgaaaatgcaaaaaacactattctatgaaaa |
33028750 |
T |
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| Q |
200 |
tgcataagacagtatatcaaatt |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
33028751 |
tgcataagacagtatatcaaatt |
33028773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 33017821 - 33017761
Alignment:
| Q |
109 |
tcaaaattatcaacttgtgtgttcatattctatgacaaatttgcagttgtagaatcggaat |
169 |
Q |
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| T |
33017821 |
tcaaatttatcaacttgtatgttaatattatatgacaaaattgaagttgtagaatcagaat |
33017761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 16455307 - 16455233
Alignment:
| Q |
2 |
tatatatatgtattgcactctt-gtaactcaattcaatgttaatttacaattcttcaatattgttgaagttctcta |
76 |
Q |
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|||||| ||||| | ||||||| |||| ||||||||||||||||| |||||| ||||||||| |||||||||||| |
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| T |
16455307 |
tatatacatgtactacactctttgtaattcaattcaatgttaattcacaatttatcaatattg-tgaagttctcta |
16455233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 1280612 - 1280540
Alignment:
| Q |
9 |
atgtattgcactcttgtaactcaatt-----caatgttaatttacaattcttcaatattgttgaagttctcta |
76 |
Q |
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|||||||| ||||||| ||||||||| |||||| |||||||| |||||||| ||| ||||||||||||| |
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| T |
1280612 |
atgtattgtactcttgcaactcaatttacttcaatgtcaatttacatttcttcaaaattattgaagttctcta |
1280540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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