View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_38 (Length: 229)
Name: NF17581_low_38
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 15180955 - 15180758
Alignment:
| Q |
16 |
atgaatactgaaaatgactaatcctattaggaaacaccaaaacatttgaaaaatcacccacccattttgtgccattaccatccacacttaacttcccaac |
115 |
Q |
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| T |
15180955 |
atgaatactgaaaatgactaatcctattaggaaacaccaaaacatttgaaaaatcacccacccattttgtgccattaccatccacacttaacttcccaac |
15180856 |
T |
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| Q |
116 |
cgttgatcttaaaatcataccaatcacattgttcctatcaatcaccacttgatcaatgttactaaatcccccatctaattttacaattggaacattat |
213 |
Q |
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| T |
15180855 |
cgttgatcttaaaatcataccaatcacattgttcctatcaatcaccacttgatcaatgttactaaatcccccatctaattttacaattggaacattat |
15180758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 38858938 - 38859130
Alignment:
| Q |
16 |
atgaatactgaaaatgactaatcctattaggaaacaccaaaacatttgaaaaatcacccacccattttgtgccattaccatccacacttaacttcccaac |
115 |
Q |
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||||||| |||| ||||||||||| ||||||||| |||||||| |||||||||| || |||| ||||||||||||||| |||| ||||||| ||||| |
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| T |
38858938 |
atgaatattgaacatgactaatccgattaggaaataccaaaactgatgaaaaatcagcctcccactttgtgccattaccactcacagttaacttaccaac |
38859037 |
T |
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| Q |
116 |
cgttgatcttaaaatcataccaatcacattgttcctatcaatcaccacttgatcaatgttactaaatcccccatctaattttacaattggaac |
208 |
Q |
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||||||||| || ||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||| |||| ||||||||||||| |
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| T |
38859038 |
cgttgatctcaagcccataccattcacattgtttctatcaatcaccacttgatcaacattactaaattgcccttctagacttacaattggaac |
38859130 |
T |
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