View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_4 (Length: 557)
Name: NF17581_low_4
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 543
Target Start/End: Complemental strand, 30272591 - 30272065
Alignment:
| Q |
17 |
aatatgattgccagagagcaaataaatcaacctttgcttggggtttagaagccagagttccatttttggacaaggagtttatcaatgttgcaatgaatat |
116 |
Q |
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| T |
30272591 |
aatatgattgccagagagcaaataaatcaacctttgcttggggtctagaagccagagttccatttttggacaaggagtttatcaatgttgcaatgaatat |
30272492 |
T |
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| Q |
117 |
tgatcctgagaataaaatggtatgagtaattagtgttactctgttgattcaataattctacaggaaataccgaaaacataatagttgtttttagtgtttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30272491 |
tgatcctgagaataaaatggtatgagtaattagtgttactctgttgattcaataattctacatgaaataccgaaaacataatagttgtttttagtgtttc |
30272392 |
T |
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| Q |
217 |
ttgtacaaatcttggaaaacaggaaatgttttcgcgggtactaactaagctggtttgtttaaaacgtccagatnnnnnnngatgaaggacgaattgagaa |
316 |
Q |
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| T |
30272391 |
ttgtacaaatcttggaaaacaggaaatgttttcgcgggtactaactaagctggtttgtttaaaacgtgcagataaaaaaagatgaaggacgaattgagaa |
30272292 |
T |
|
| Q |
317 |
gtatattctgaggaaggcctttgatgatgaagagaatccttatctgccaaaggtactactaagtaatttgctgcaatgtctattgatttatgcaaaattg |
416 |
Q |
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| T |
30272291 |
gtatattctgaggaaggccttcgatgatgaagagaatccttatctgccaaaggtactactaagtaatttgctgcaatgtctattgatttatgcaaaattg |
30272192 |
T |
|
| Q |
417 |
gtttgcgaaactaacatcgaaacattcattttcatgcagcacattttatacaggcagaaggaacaattcagtgatggtgttggttatagttggattgatg |
516 |
Q |
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| T |
30272191 |
gtttgcgaaactaacattgaaacattcattttcatgcagcacattttatacaggcagaaggaacaattcagtgatggtgttggttatagttggattgatg |
30272092 |
T |
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| Q |
517 |
gccttaaagctcatgctgcaaaacatg |
543 |
Q |
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| T |
30272091 |
gccttaaagctcatgctgcaaaacatg |
30272065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 437 - 543
Target Start/End: Original strand, 29359342 - 29359448
Alignment:
| Q |
437 |
aacattcattttcatgcagcacattttatacaggcagaaggaacaattcagtgatggtgttggttatagttggattgatggccttaaagctcatgctgca |
536 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
29359342 |
aacattcattttcatgcagcacattttatgcaggcagaaggaacaattcagtaatggtgttggttatagttggattgacgaccttaaagctcattgtgca |
29359441 |
T |
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| Q |
537 |
aaacatg |
543 |
Q |
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| T |
29359442 |
aaacatg |
29359448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 25965183 - 25965072
Alignment:
| Q |
30 |
gagagcaaataaatcaacctttgcttggggtttagaagccagagttccatttttggacaaggagtttatcaatgttgcaatgaatattgatcctgagaat |
129 |
Q |
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| T |
25965183 |
gagagcaaataaatcaacatatgcatggggactagaagctagggtaccatttttggacaaggattttatcaaagttgcaatggacattgatcctgagtac |
25965084 |
T |
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| Q |
130 |
aaaatggtatga |
141 |
Q |
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| T |
25965083 |
aaaatggtatga |
25965072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 448 - 543
Target Start/End: Complemental strand, 25964815 - 25964720
Alignment:
| Q |
448 |
tcatgcagcacattttatacaggcagaaggaacaattcagtgatggtgttggttatagttggattgatggccttaaagctcatgctgcaaaacatg |
543 |
Q |
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| T |
25964815 |
tcatgcagcacattttatatagacagaaggaacagttcagtgatggagttggctatggctggattgatggaattaaggaccatgctgcaaaacatg |
25964720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 25964977 - 25964904
Alignment:
| Q |
300 |
gaaggacgaattgagaagtatattctgaggaaggcctttgatgatgaagagaatccttatctgccaaaggtact |
373 |
Q |
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| T |
25964977 |
gaaggaagaattgagaaatggattctaaggaaggcttttgatgatgaagagaatccttatctgcctaaggtact |
25964904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 39545999 - 39546063
Alignment:
| Q |
453 |
cagcacattttatacaggcagaaggaacaattcagtgatggtgttggttatagttggattgatgg |
517 |
Q |
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|||||||| || ||||||||||||||||| |||||||||||||| || || |||||||||||||| |
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| T |
39545999 |
cagcacatattgtacaggcagaaggaacagttcagtgatggtgtcggatacagttggattgatgg |
39546063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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