View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17581_low_46 (Length: 214)

Name: NF17581_low_46
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17581_low_46
NF17581_low_46
[»] chr3 (3 HSPs)
chr3 (20-198)||(43789004-43789192)
chr3 (34-92)||(20383770-20383828)
chr3 (53-92)||(8560174-8560213)
[»] chr1 (2 HSPs)
chr1 (19-92)||(10778177-10778250)
chr1 (54-91)||(15554744-15554781)
[»] chr5 (3 HSPs)
chr5 (19-92)||(38054015-38054088)
chr5 (20-92)||(29986467-29986539)
chr5 (50-92)||(39797048-39797090)
[»] chr8 (2 HSPs)
chr8 (24-92)||(35470351-35470419)
chr8 (20-92)||(35396284-35396356)
[»] chr6 (1 HSPs)
chr6 (20-88)||(16125311-16125378)
[»] chr4 (2 HSPs)
chr4 (20-92)||(53436800-53436872)
chr4 (21-92)||(35309647-35309718)
[»] chr7 (3 HSPs)
chr7 (21-92)||(47642035-47642105)
chr7 (20-92)||(7355940-7356012)
chr7 (44-92)||(34535010-34535058)
[»] chr2 (1 HSPs)
chr2 (37-92)||(12059813-12059868)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 43789004 - 43789192
Alignment:
Q  20 ctgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgggtttctactaagat---------ccgc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||    
T  43789004 ctgcgacaactgagaagttactgaaataatatgcctaatattgtatatattgaaagcccaggggatgccatgggtttctactaagatccgccactgccgc 43789103  T
Q  111 tgatgccgtcggagttttacatgccggagactatg-cccaggtgtatttatcgcatacattaccacagatgccgtttgaggtaatggtg 198  Q
    ||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43789104 tgatgccgtcggagttttacacgctggagactatgccccaggtgtatttatcgcatacattaccacagatgacgtttgaggtaatggtg 43789192  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 20383770 - 20383828
Alignment:
Q  34 aacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    ||||| |||||||| ||||| |||||| ||||||||| |||||||||||||||||||||    
T  20383770 aacttgctgaaatattatgcataatatggtatatattaaaaacccaggggatgccatgg 20383828  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 8560174 - 8560213
Alignment:
Q  53 cctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  8560174 cctaatatagtatatattgaaaacctaggggatgccatgg 8560213  T

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Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 10778250 - 10778177
Alignment:
Q  19 actgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    |||||| ||||||  |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10778250 actgcgccaactgtaaacttactaaaataatatgcctaatatggtatatattgaaaacccaggggatgccatgg 10778177  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 15554744 - 15554781
Alignment:
Q  54 ctaatattgtatatattgaaaacccaggggatgccatg 91  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  15554744 ctaatatggtatatattgaaaacctaggggatgccatg 15554781  T

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Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 38054088 - 38054015
Alignment:
Q  19 actgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    |||||| ||||||  |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  38054088 actgcgccaactgtaaacttactaaaataatatgcctaatatggtatatattgaaaacccaagggatgccatgg 38054015  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 29986539 - 29986467
Alignment:
Q  20 ctgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    ||||||||| | | |||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  29986539 ctgcgacaattcaaaacttactaaaataatatgtctaatatggtatatattgaaaacccaggggatgccatgg 29986467  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 39797048 - 39797090
Alignment:
Q  50 atgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  39797048 atgcctaatatagtatatattgaaaaaccaggggatgccatgg 39797090  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 35470419 - 35470351
Alignment:
Q  24 gacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    ||||||||| |||||||| ||||||||||| |||||| ||||||||||||||| || ||||||||||||    
T  35470419 gacaactgaaaacttactaaaataatatgcttaatatggtatatattgaaaactcaagggatgccatgg 35470351  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 35396356 - 35396284
Alignment:
Q  20 ctgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    |||| |||||||| |  ||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  35396356 ctgcaacaactgaaacattactaaaataatatgcctaatatgatatatattggaaacccaggggatgccatgg 35396284  T

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Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 16125311 - 16125378
Alignment:
Q  20 ctgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgcc 88  Q
    ||||||||||||| |||||| ||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  16125311 ctgcgacaactgaaaactta-tgaaatattatgcctaatatgctatatattgaaaacccaggggatgcc 16125378  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 53436800 - 53436872
Alignment:
Q  20 ctgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    ||||||| | ||| ||||| |||||||| ||||| |||||| ||||||||| |||||||||||||||||||||    
T  53436800 ctgcgacgaatgaaaacttgctgaaatattatgcataatatggtatatattaaaaacccaggggatgccatgg 53436872  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 35309647 - 35309718
Alignment:
Q  21 tgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    |||||||||||| |||||||| |||||| ||   ||||||  ||||||||||||||||| ||||||||||||    
T  35309647 tgcgacaactgaaaacttactaaaataacatatttaatatgatatatattgaaaacccaagggatgccatgg 35309718  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 47642035 - 47642105
Alignment:
Q  21 tgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    |||||||||||| |||||||  |||||||||||||| ||| ||||||||||||||| || ||||||||||||    
T  47642035 tgcgacaactgaaaacttaccaaaataatatgcctagtatggtatatattgaaaacaca-gggatgccatgg 47642105  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 7356012 - 7355940
Alignment:
Q  20 ctgcgacaactgagaacttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    ||||||| | ||| ||||| |||||||| ||||| |||||| |||||| || |||||||||||||||||||||    
T  7356012 ctgcgacgaatgaaaacttgctgaaatattatgcataatatggtatatgttaaaaacccaggggatgccatgg 7355940  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 34535058 - 34535010
Alignment:
Q  44 aataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    |||| ||||| |||||| ||||||||| |||||||||||||||||||||    
T  34535058 aatattatgcataatatggtatatattaaaaacccaggggatgccatgg 34535010  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 12059868 - 12059813
Alignment:
Q  37 ttactgaaataatatgcctaatattgtatatattgaaaacccaggggatgccatgg 92  Q
    ||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  12059868 ttactaaaataatatgcctaatatgatatatattggaaacccaggggatgccatgg 12059813  T

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