View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_5 (Length: 521)
Name: NF17581_low_5
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 509
Target Start/End: Complemental strand, 31048427 - 31047938
Alignment:
| Q |
20 |
gagaaacctaaagaagtggaataaaaatacttgaaaattccaaagagatagaataaagtattcttgaaaagatcgaagagttaaattaaaaagtatttga |
119 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31048427 |
gagaaacctaaagaggtggaataaaaatacttgaaaattccaaagagatagaataaagtattcttgaaaagatcgaagagttaaattaaaaagtatttga |
31048328 |
T |
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| Q |
120 |
gaagtcgagtaacgaacacgtttgacaattgatatggtggattaagtcgtgtgagtgaagcagacaaattatctttgtaagaagagaactagatgtaaca |
219 |
Q |
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| T |
31048327 |
gaagtcgagtaacgaacacgtttgacaattgatatggtggattaagtcgtgtgagtgaagcagacaaattatctttgtaagaagagaactagatgtaaca |
31048228 |
T |
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| Q |
220 |
taacatttcttgtgaagtagcataaaatatatttgcattcttatatccctttctctttatcattttgtccttttctctaatatcattcaaaaatgatttt |
319 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31048227 |
taacatttcttgtgaactagcataaaatatatttgcattcttatatccctttctctttatcattttgtccttttctctaatatcattcaaaaatgatttt |
31048128 |
T |
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| Q |
320 |
cactctgtattaagaaacttgaaagagtggtgtgagataaagagaatcagcatcgaaatttccatgagttctagcataatactttcatttttattggctc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31048127 |
cactctgtattaagaaacttgaaagagtggtgtgagataaagagaatcagcatcgaaatttccatgagttctagcataatactttcatttttgttggctc |
31048028 |
T |
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| Q |
420 |
aataagcccaatttcattgttgaattccaagagaatccaaagtttccttagttatcccattgcagggcacaccatccttttccttgatga |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31048027 |
aataagcccaatttcattgttgaattccaagagaatccaaagttcccttagttatcccattgtagggcacaccatccttttccttgatga |
31047938 |
T |
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