View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17581_low_8 (Length: 473)
Name: NF17581_low_8
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 2558461 - 2558671
Alignment:
| Q |
18 |
ggagggtccaaacccaatgcctactagttttgatgaagcaaaccttggtcatgacaatgatacaagtgaaccaagcattgaacagttacataccgacaca |
117 |
Q |
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| T |
2558461 |
ggagggtccaaacccaatgcctactagttttgatgaagcaaaccttggtcatgacaatgatacaagtgaaccaagcattgaacatttacataccgacaca |
2558560 |
T |
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| Q |
118 |
gatgaagaatacattgttcacagcaatgaagaaattgaagaatgtgaggaaatggaagagcataattactcttttgatgaagaaagtgatgcagaaattg |
217 |
Q |
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| T |
2558561 |
gatgaagaatacattgttcacagcaatgaagaaattgaagaaagtgaggaaatggatgagcataattactcttttgatgaagaaagtgatgcagaaattg |
2558660 |
T |
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| Q |
218 |
acatggatgag |
228 |
Q |
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| T |
2558661 |
acatggatgag |
2558671 |
T |
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Target: chr7 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 19330269 - 19330467
Alignment:
| Q |
25 |
ccaaacccaatgcctactagttttgatgaagcaaaccttggtcatgacaatgatacaagtgaaccaagcattgaacagttacataccgacacagatgaag |
124 |
Q |
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| T |
19330269 |
ccaaacccaatgcctactagttttgatgaagcaaaccttggtcatggcaatgatacaagtgaaccaagcattgaacagttacataccgacacagatgaag |
19330368 |
T |
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| Q |
125 |
aatacattgttcacagcaatgaagaaattgaagaatgtgaggaaatggaagagcataattactcttttgatgaagaaagtgatgcagaaattgacatgga |
224 |
Q |
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| T |
19330369 |
aatacattgttcacagcaatgaagaaattgaagaaagtgaggaaatggatgagcataattactcttt-----aagaaagtgatgcagaaattgacatgga |
19330463 |
T |
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