View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17581_low_9 (Length: 453)
Name: NF17581_low_9
Description: NF17581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17581_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 3974370 - 3973946
Alignment:
| Q |
9 |
gagaagaaataaagtatccaaattgaataatgttaaatatcacgagaaaatgtctcgcgaatccgtcccgaccgaacaccacatcatgctccttttttcc |
108 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3974370 |
gagaagaaatagagtatccaaattgaataatgttaaatatcacgagaaaatgtctcgcgaatccatcccgaccgaacaccacatcatgctccttttttcc |
3974271 |
T |
|
| Q |
109 |
actaattccggattaaagccacacaactgcttttctannnnnnnataacgtaaaaccatcttcgtgaaatttcttgagatg------------ttgcaca |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3974270 |
actaattccggattaaagccacacaactgattttctattattttataacgtaaaaccatcttcgtgaaatttcttgagatggagtgctttcttttgcaca |
3974171 |
T |
|
| Q |
197 |
aaagattctagcgttcctttccttcccaattacacaagtggttgcaaaccatattaaatacataaaggagcaccgggatttagcgatacctaaagaaata |
296 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3974170 |
aaagattatagcgttcctttccttcccaattacataagtgcttgcaaaccagattaaagacataaaggagcaccgggatttagcgatacctaaagaaata |
3974071 |
T |
|
| Q |
297 |
ccgatatggagataatgatctgagatggttaaagggttaaccaaagaaacacctaaccaaagatgaaccaactggcaaacctgaccaaaaacatcacaat |
396 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3974070 |
ccgatctggagataatgatctgagatggttaaagggt----------------taaccaaagatgaaccaactggcaaatctgaccaaaaacatcacaat |
3973987 |
T |
|
| Q |
397 |
gcaagaaaatgtgatccgtcgattcaatcatcccgcaacca |
437 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3973986 |
gcaagaaaatgtgatccttcgattcaatcatcccgcaacca |
3973946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 193 - 430
Target Start/End: Complemental strand, 4983691 - 4983454
Alignment:
| Q |
193 |
cacaaaagattctagcgttcctttccttcccaattacacaagtggttgcaaaccatattaaatacataaaggagcaccgggatttagcgatacctaaaga |
292 |
Q |
| |
|
||||||| ||||| || ||| |||||||| |||| | ||| || |||||||||||| ||||| |||||| ||||| | ||| ||||| | ||| |||| |
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|
| T |
4983691 |
cacaaaatattcttgcattcttttccttctaaattgcccaaatgcttgcaaaccatactaaatgcataaaagagcatctggaattagcaaaaccagaaga |
4983592 |
T |
|
| Q |
293 |
aataccgatatggagataatgatctgagatggttaaagggttaaccaaagaaacacctaaccaaagatgaaccaactggcaaacctgaccaaaaacatca |
392 |
Q |
| |
|
||||| | || ||||||||||| ||| ||||||| ||||| | ||||||||||||||||| || |||| | || |||||||||||||| ||||| |
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| T |
4983591 |
aatacaaaactgaagataatgatccgaggtggttaatgggtttattgaagaaacacctaaccaatgacgaacaagttgtcaaacctgaccaaacacatcg |
4983492 |
T |
|
| Q |
393 |
caatgcaagaaaatgtgatccgtcgattcaatcatccc |
430 |
Q |
| |
|
|||||||| || | |||||||| |||||||| |||||| |
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|
| T |
4983491 |
caatgcaaaaataggtgatccgccgattcaaacatccc |
4983454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 198 - 403
Target Start/End: Original strand, 25308264 - 25308469
Alignment:
| Q |
198 |
aagattctagcgttcctttccttcccaattacacaagtggttgcaaaccatattaaatacataaaggagcaccgggatttagcgatacctaaagaaatac |
297 |
Q |
| |
|
|||||||||| |||||||||||| | |||||| |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
25308264 |
aagattctagtgttcctttcctttcaaattacccaagagcttgcaaaccagattaaatacataaaggagcaccgggatttagcgatacctgaggaaatac |
25308363 |
T |
|
| Q |
298 |
cgatatggagataatgatctgagatggttaaagggttaaccaaagaaacacctaaccaaagatgaaccaactggcaaacctgaccaaaaacatcacaatg |
397 |
Q |
| |
|
|| || |||||||||||||||||| |||||||||||| | |||| |||||||| |||||||||||||| ||||||||| ||||||||||||||| |
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| T |
25308364 |
tgaactgaagataatgatctgagatgattaaagggttaattgaggaaatgcctaaccagagatgaaccaactgccaaacctgataaaaaacatcacaatg |
25308463 |
T |
|
| Q |
398 |
caagaa |
403 |
Q |
| |
|
|||||| |
|
|
| T |
25308464 |
caagaa |
25308469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 201 - 424
Target Start/End: Original strand, 9083777 - 9083996
Alignment:
| Q |
201 |
attctagcgttcctttccttcccaattacacaagtggttgcaaaccatattaaatacataaaggagcaccgggatttagcgatacctaaagaaataccga |
300 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||| |||||||| |||| ||||||||||||||||| | ||||| ||||||| |||||||| || |
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|
| T |
9083777 |
attctagcgttcccttccttccaaattagtcaagtgcttgcaaac----ttaagtacataaaggagcaccgagctttagagatacctgaagaaatattga |
9083872 |
T |
|
| Q |
301 |
tatggagataatgatctgagatggttaaagggttaaccaaagaaacacctaaccaaagatgaaccaactggcaaacctgaccaaaaacatcacaatgcaa |
400 |
Q |
| |
|
| || ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||| |
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| T |
9083873 |
tctgaagataatgagctgatatggttaaagggttaaccgaagaaacacctaaccaaagatgaaccaactgccaaacctgaccaaatacttcgcaatgcaa |
9083972 |
T |
|
| Q |
401 |
gaaaatgtgatccgtcgattcaat |
424 |
Q |
| |
|
||| | ||||||| |||||||| |
|
|
| T |
9083973 |
gaataactgatccgctgattcaat |
9083996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 397
Target Start/End: Complemental strand, 30295846 - 30295641
Alignment:
| Q |
192 |
gcacaaaagattctagcgttcctttccttcccaattacacaagtggttgcaaaccatattaaatacataaaggagcaccgggatttagcgatacctaaag |
291 |
Q |
| |
|
|||| ||| |||||||| ||| ||||||||| |||||| ||| || |||||||||||| ||| | |||||| ||||| | | || |||| | |||| ||| |
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|
| T |
30295846 |
gcacgaaaaattctagcattcatttccttccaaattacccaaatgcttgcaaaccataataagtgcataaaagagcatctgaatatagcaaaacctgaag |
30295747 |
T |
|
| Q |
292 |
aaataccgatatggagataatgatctgagatggttaaagggttaaccaaagaaacacctaaccaaagatgaaccaactggcaaacctgaccaaaaacatc |
391 |
Q |
| |
|
|||||| | || |||||||||| || || | ||||||||| ||||||| ||||| ||||||| |||| || | | |||||||| ||||| ||||| |
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|
| T |
30295746 |
aaatacgaaactgaagataatgattcgaaattgataaagggtttaccaaaggaacacttaaccaatgatggacaagataccaaacctgcccaaacacatc |
30295647 |
T |
|
| Q |
392 |
acaatg |
397 |
Q |
| |
|
|||||| |
|
|
| T |
30295646 |
acaatg |
30295641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 47373191 - 47373132
Alignment:
| Q |
33 |
gaataatgttaaa--tatcacgagaaaatgtctcgcgaatccgtcccgaccgaacaccac |
90 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| | || |||| ||||||||| |
|
|
| T |
47373191 |
gaataatgttaaaaatatcacgagaaaatgtctcgcaaattcttcacgactgaacaccac |
47373132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 201 - 397
Target Start/End: Original strand, 10122738 - 10122934
Alignment:
| Q |
201 |
attctagcgttcctttccttcccaattacacaagtggttgcaaaccatattaaatacataaaggagcaccgggatttagcgatacctaaagaaataccga |
300 |
Q |
| |
|
|||||||| ||||||||||| | |||||| ||| || |||||||| | ||||| |||||||||||||| || |||||| ||| ||||||| ||||||| | |
|
|
| T |
10122738 |
attctagcattcctttcctttcaaattacccaattgcttgcaaactagattaagtacataaaggagcaacgagatttaacgaaacctaaacaaataccaa |
10122837 |
T |
|
| Q |
301 |
tatggagataatgatctgagatggttaaagggttaaccaaagaaacacctaaccaaagatgaaccaactggcaaacctgaccaaaaacatcacaatg |
397 |
Q |
| |
|
| || |||||||||||||| ||| ||||||| || ||| ||||||| ||||||||| ||||||||||||| || ||| ||||||| || |||||||| |
|
|
| T |
10122838 |
tctgaagataatgatctgacatgattaaaggatttaccgaagaaacgcctaaccaacgatgaaccaactgccacacccgaccaaacacgtcacaatg |
10122934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 321 - 437
Target Start/End: Complemental strand, 9017523 - 9017407
Alignment:
| Q |
321 |
atggttaaagggttaaccaaagaaacacctaaccaaagatgaaccaactggcaaacctgaccaaaaacatcacaatgcaagaaaatgtgatccgtcgatt |
420 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
9017523 |
atggttaaagggtttaccaaggaaacacctcaccagtgatgaaccaattgccaaacctgaccaaaaacatcacaatgcaagaatatgtgatctgtcgatt |
9017424 |
T |
|
| Q |
421 |
caatcatcccgcaacca |
437 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9017423 |
caatcatcccgcaacca |
9017407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 37905481 - 37905572
Alignment:
| Q |
44 |
aatatcacgagaaaatgtctcgcgaatccgtcccgaccgaacaccacatcatgctccttttttccactaattccggattaaagccacacaac |
135 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
37905481 |
aatatcacgagaacatgtctcgcgaatccttcccgactgaacaccacatcatgctcattttttccactaattccggattaaagtgacacaac |
37905572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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