View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17582_high_1 (Length: 584)
Name: NF17582_high_1
Description: NF17582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17582_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 11 - 569
Target Start/End: Original strand, 9833424 - 9833982
Alignment:
| Q |
11 |
cataggacaccatacgtcatctactcaactacgtcttttgtatttattggatnnnnnnncatgtcccgtgttgattagtgacgtggcctaaatagagttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9833424 |
cataggacaccatacgtcatctactcaactacgtcttttgtatttattggataaaaaaacatgtcccgtgttgattagtgacgtggcctaaatagagttt |
9833523 |
T |
|
| Q |
111 |
ataaagtgtgtgcaatgctcaccttgccaatcagttttgtggagttgagtcaggtctaaaatctaagaatattgtctgaaagcaatttggttcagtttaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9833524 |
ataaagtgtgtgcaatgctcaccttgccaatcagttttgtggagttgagtcaggtctaaaatctaagaatattgtctgaaagcaatttggttcagtttaa |
9833623 |
T |
|
| Q |
211 |
ataagaatcattcatttattttctctgcatttagtttcttatgaaaaggtatgtgcatgtgtggtgtctttaagacatgtagggatttcacatgggtaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9833624 |
ataagaatcattcatttattttctctgcatttagtttcttatgaaaaggtatgttcatgtgtggtgtctttaagacatgtagggatttcacatgggtaaa |
9833723 |
T |
|
| Q |
311 |
aaagaatgaaagtgtactataagttattatgttctgctctatttacttttaatatgcaccaaacataacatgacttacatgttatatttatagtaaggaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9833724 |
aaagaatgaaagtgtactataagttattatgttctgctctatttacttttaatatgcaccaaacataacatgacttacatgttatatttatagtaaggaa |
9833823 |
T |
|
| Q |
411 |
tattgatgaagtgtatttctgttgcattgtaggtcacagatgcaaacaattattacaaaagcatgtaaggagcttggcataagagctcttcccagtaaac |
510 |
Q |
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| T |
9833824 |
tattgatgaagtgtatttctgttgcattgtaggtcacagatgcaaacaattattacaaaagcatgtaaggagcttggcataagagctcttcccagtaaac |
9833923 |
T |
|
| Q |
511 |
gggtgagtatgtttctgattctgccgtggatttgacatttcattgctcagcagaaaact |
569 |
Q |
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| T |
9833924 |
gggtgagtatgtttctgattctgccgtggatttgacatttcattgctcagcagaaaact |
9833982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 11 - 569
Target Start/End: Original strand, 9844243 - 9844801
Alignment:
| Q |
11 |
cataggacaccatacgtcatctactcaactacgtcttttgtatttattggatnnnnnnncatgtcccgtgttgattagtgacgtggcctaaatagagttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
9844243 |
cataggacaccatacgtcatctactcagctatgtcttatgtatttattggataaaaaaacatgtcccgtgttgaatagtgatgtggcctaaatagagttt |
9844342 |
T |
|
| Q |
111 |
ataaagtgtgtgcaatgctcaccttgccaatcagttttgtggagttgagtcaggtctaaaatctaagaatattgtctgaaagcaatttggttcagtttaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9844343 |
ataaagtgtgtgcaatgctcaccttgccaatcagttttgtggagttgagtcaggtctaaaatctaagaatattgtctgaaagcaatttggttcagtttga |
9844442 |
T |
|
| Q |
211 |
ataagaatcattcatttattttctctgcatttagtttcttatgaaaaggtatgtgcatgtgtggtgtctttaagacatgtagggatttcacatgggtaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9844443 |
ataagaatcattcatttattttctctgcatttagtttcttatgaaaaggtatgttcatgtgtggtgtctttaagacatgtagggatttcacatgggtaaa |
9844542 |
T |
|
| Q |
311 |
aaagaatgaaagtgtactataagttattatgttctgctctatttacttttaatatgcaccaaacataacatgacttacatgttatatttatagtaaggaa |
410 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9844543 |
aaagaatgaaagtgtactataagttattaatgtctgctctatttacttttaatatgcaccaaacataacatgacttacatgttatatttatagtaaggaa |
9844642 |
T |
|
| Q |
411 |
tattgatgaagtgtatttctgttgcattgtaggtcacagatgcaaacaattattacaaaagcatgtaaggagcttggcataagagctcttcccagtaaac |
510 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9844643 |
tattgatgaagtgtatttctgttacattgtaggtcacagatgcaaacaattattacaaaagcatgtaaggagcttggcataagagctcttcccagtaaac |
9844742 |
T |
|
| Q |
511 |
gggtgagtatgtttctgattctgccgtggatttgacatttcattgctcagcagaaaact |
569 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
9844743 |
gggtgagtatgtttctgattctgccgtggatttgatatttcattgctcatcagaaaact |
9844801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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