View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17582_low_3 (Length: 464)
Name: NF17582_low_3
Description: NF17582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17582_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 13347578 - 13347148
Alignment:
| Q |
19 |
tgtaagtacaagtttgatatgtctcttcattcgactcttcgttccattgagaatgtccgaagaggatatggaaatcggtgacgaggctgctcatggtgaa |
118 |
Q |
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| T |
13347578 |
tgtaagtacaagtttgatatgtctcttcattcgactcttcgttccattgagaatgtctgaagaggatatggaaatcggtgacgaggctgctcatggtgaa |
13347479 |
T |
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| Q |
119 |
gaagcttatgcaatttggggtcaaggtgataaacatgagaattcaagttcaaaatatggaagttctttgtatgaagatgttgaagttgcggccaccacga |
218 |
Q |
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| T |
13347478 |
gaagcttatgcaatttggggtcaaggtgataaacatgagaattcaaattcaaaatatggaagttctttgtatgaagatgttgaagttgcggccaccacga |
13347379 |
T |
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| Q |
219 |
agaataagcgtggtagccagattgagatgatgtgaaactagatattatacgtgccgtttttatgaatttggtcttg-ttttaagaaaaataaaagcttaa |
317 |
Q |
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| T |
13347378 |
agaataagcgtggtagccagattgagatgatgtgaaactagatatcatatgtg-ttttgttatgaatttggtcttgtttttaagaaaaataaaagcttaa |
13347280 |
T |
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| Q |
318 |
agttttattgttgattgaatactacaattcctatgttaatttttcagagcaaatgaataagataagttattgatatatgtttttgatgtattgtattttt |
417 |
Q |
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| T |
13347279 |
agttttattgttgattgaatactacaattcctatgttaatttttcagaacaaatgaataagataagttattgatatatgtttttgatgtattgtattttt |
13347180 |
T |
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| Q |
418 |
gttttggaatcaagtgctttttcattgtttat |
449 |
Q |
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| T |
13347179 |
gttttggaatcaagtgctttttcattgtttat |
13347148 |
T |
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