View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17582_low_4 (Length: 419)
Name: NF17582_low_4
Description: NF17582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17582_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 180053 - 179671
Alignment:
| Q |
10 |
attatactgtagtaagaatatgctaaaatggtttaaaaaggataaggataagatttcaattcaatcaataattaatacgatttcttatctcaatgaactt |
109 |
Q |
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| T |
180053 |
attatactgtagtaagaatatgctaaactggtttaaaaaggataaggataagatttcaattcaatcaataactaatacgatttcttatctcaatgaaatt |
179954 |
T |
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| Q |
110 |
ggccataccaagtgtagtggttgagtttagtaaattttaatcaaggtcaaatcaattcaaagcaattgagcttcatacctatacctaacaggaacaataa |
209 |
Q |
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| T |
179953 |
ggtcataccaagtgcagtggtggagtttagtaaatttgaatcaaggtcaaa----------gcaattgagcttcatacctatacctaacaggaacaataa |
179864 |
T |
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| Q |
210 |
atcatagtttacttatttttatttttagaaggtactttaaaatttaatctaatcattttcaaaagtttgacatgttagacttgggggccgtttagattaa |
309 |
Q |
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| T |
179863 |
atcgtagtttacttatttttatttttagaaggtactttaaaatttaatctaatcattttcaaaagtttggcatgttagacttaggggccgtttagattaa |
179764 |
T |
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| Q |
310 |
cttaattttggatatatgatagaagcatatcatgatagcatcctaattggtcaattgattttcaactgtgggtgtagatccactctcacaact |
402 |
Q |
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| T |
179763 |
cttaattttggatatatgatagaagcatatcatgatagcatcctaattggtcaattgattttgaactgtgggtgtagatccactctcacaact |
179671 |
T |
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