View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17582_low_6 (Length: 351)
Name: NF17582_low_6
Description: NF17582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17582_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 29424342 - 29424028
Alignment:
| Q |
7 |
tccaagaatatcaaaggatcctttaacgagctttgcttgatatgttgagaactttggtaatcgactccctactaaggacctcatggagcttggatagtct |
106 |
Q |
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| T |
29424342 |
tccaataaaatcaaaggatcctttaacgagctttgcttgatatgttgagaactttggtaatcgactccctactaaggacctcatggagcttggatagtct |
29424243 |
T |
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| Q |
107 |
ccaattgtcaatggatccatatacctgcaatacatacttttaaatagccattttgataagagtaatgatatatttacaacactttcttttttgcacattc |
206 |
Q |
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| T |
29424242 |
ccaattgtcaatggatccatatacctgcaatatatacttt--------------gataagagtaatgatatattgacaacactttcttttttgcacattc |
29424157 |
T |
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| Q |
207 |
tcactacaccatcaaacatgtgttataattcaaatgaatagatgattaatttaattattacatcttgaagatgatagtaaatagattagtgaaaaacaga |
306 |
Q |
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| T |
29424156 |
tccctacaccatcaaacatgtgttataattcaattgaatagatgattaatttaattattacatcttgaagatgatagtaaatagattagtgaaaaacaga |
29424057 |
T |
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| Q |
307 |
ttacttaggcaacaagttatctagttaat |
335 |
Q |
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| T |
29424056 |
ttacttaggcaacaagttatctagttaat |
29424028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 29457549 - 29457684
Alignment:
| Q |
7 |
tccaagaatatcaaaggatcctttaacgagctttgcttgatatgttgagaactttggtaatcgactccctactaaggacctcatggagcttggatagtct |
106 |
Q |
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| T |
29457549 |
tccaataaaatcaaaggaccctcttacaagctttgcttgatactttgagaattttggtaatcgacttcctactaaggacctcatggagcttggataatct |
29457648 |
T |
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| Q |
107 |
ccaattgtcaatggatccatatacctgcaatacata |
142 |
Q |
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| T |
29457649 |
cctattgtcaatggatccataaacctacaatacata |
29457684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 38638525 - 38638453
Alignment:
| Q |
261 |
ttattacatcttgaagatgatagtaaatagattagtgaaaaacagattacttaggcaacaagttatctagtta |
333 |
Q |
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| T |
38638525 |
ttattgcatcatgaagatgatagtgaacagataagtgaaaactagattacttaggccacaagttatctagtta |
38638453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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