View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17582_low_7 (Length: 284)
Name: NF17582_low_7
Description: NF17582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17582_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 267
Target Start/End: Original strand, 46032225 - 46032466
Alignment:
| Q |
26 |
gtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtattaaattcctcagctgtccaatcctctttttcaaagtcaccatatagg |
125 |
Q |
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| T |
46032225 |
gtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtattaaattcctcagctgtccaatcctctttttcaaagtcaccatatagg |
46032324 |
T |
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| Q |
126 |
acacataattggatcttcatggaggaaccctcttccatgactacgcgttgctgattttcaacatcacgcagttcaatttgaagtggtacatctccctcag |
225 |
Q |
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| T |
46032325 |
acacataattggatcttcatggaggaaccctcttccatgactacgcgttgctgattttcaacatcacgcagttcaatttgaagtggttcatctccctcag |
46032424 |
T |
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| Q |
226 |
ctttgatggtggacttggtgaaaattctgtttggcaatttgt |
267 |
Q |
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| T |
46032425 |
ctttgatggtggacttagtgaaaattctgtttggcaatttgt |
46032466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 46019554 - 46019759
Alignment:
| Q |
27 |
tttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtattaaattcctcagctgtccaatcctctttttcaaagtcaccatatagga |
126 |
Q |
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|||||||||| |||| | ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46019554 |
tttcctttcagtagttgtccttttccaactcttggaggtacaatttgagtattaaactcctcagctgtccaatcctctttttcaaagtcaccatatagga |
46019653 |
T |
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| Q |
127 |
cacataattggatcttcatggaggaaccctcttccatgactacgcgttgctgattttcaacatcacgcagttcaatttgaagtggtacatctccctcagc |
226 |
Q |
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||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||||||||||| |
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| T |
46019654 |
cacataattggatcttcatcgaggaaccttcttccctgactatgcgttgctgatttccagcatcacgcagttcaatttgaagcggttcatctccctcagc |
46019753 |
T |
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| Q |
227 |
tttgat |
232 |
Q |
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|||||| |
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| T |
46019754 |
tttgat |
46019759 |
T |
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