View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17584_high_1 (Length: 581)

Name: NF17584_high_1
Description: NF17584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17584_high_1
NF17584_high_1
[»] chr6 (3 HSPs)
chr6 (33-200)||(6500474-6500641)
chr6 (231-400)||(6500287-6500456)
chr6 (407-563)||(6500032-6500188)
[»] chr4 (10 HSPs)
chr4 (241-352)||(7636900-7637011)
chr4 (235-352)||(7628524-7628641)
chr4 (240-352)||(7606072-7606184)
chr4 (244-352)||(7615086-7615194)
chr4 (244-336)||(7656312-7656404)
chr4 (134-196)||(7615229-7615291)
chr4 (135-178)||(7637061-7637104)
chr4 (146-196)||(7656227-7656277)
chr4 (135-184)||(7606227-7606276)
chr4 (145-181)||(39082357-39082393)
[»] chr3 (4 HSPs)
chr3 (117-200)||(40147426-40147509)
chr3 (240-344)||(40147536-40147640)
chr3 (240-333)||(8102310-8102403)
chr3 (129-200)||(8102430-8102501)
[»] chr7 (5 HSPs)
chr7 (241-352)||(8936264-8936375)
chr7 (241-352)||(8913761-8913872)
chr7 (240-337)||(8941907-8942004)
chr7 (134-178)||(8936170-8936214)
chr7 (135-184)||(8941816-8941865)
[»] scaffold0190 (1 HSPs)
scaffold0190 (144-189)||(4448-4493)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 6500641 - 6500474
Alignment:
Q  33 ttgcagtctgatgagaaattgaagaataactacgaatcttggttgagaaatccgagcattagaatctctagcacaatcaatagtaatacatttgccagta 132  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  6500641 ttgcagtctgatgagaaattgaagaataaatacgaatcttggttgagaaatccgagcattagaatctctagcacgatcaatagtaatacatttgccggta 6500542  T
Q  133 acagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500541 acagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagt 6500474  T

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Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 231 - 400
Target Start/End: Complemental strand, 6500456 - 6500287
Alignment:
Q  231 tatggttagtgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttc 330  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  6500456 tatggttagtgtatttgctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttc 6500357  T
Q  331 atggatgctgtgtccaactaataataatgtatgtagatttaaggtttacaaaatgatgccgttttagttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500356 atggatgctgtgtccaactaataataatgtatgtagatttaaggtttacaaaatgatgccgttttagttt 6500287  T

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Target: chr6; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 407 - 563
Target Start/End: Complemental strand, 6500188 - 6500032
Alignment:
Q  407 aaggtttgattttccgtctgtgttgatatgtattgtatcaagttgaggcatgtggtgacatgtattatgcattcagttacggtctacggagtttgatagc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  6500188 aaggtttgattttccgtctgtgttgatatgtattgtatcaagttgaggcatgtggtgacatgtatcatgcattcagttacagtctacgaagtttgatagc 6500089  T
Q  507 tcaactgatttgagcttaagataaaatgttggagatgtaggttcatagctggataag 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6500088 tcaactgatttgagcttaagataaaatgttggagatgtaggttcatagctggataag 6500032  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 7637011 - 7636900
Alignment:
Q  241 gtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgctg 340  Q
    |||||||| |||| |||||| |||||||||||||||||||||||| |||||    ||| |||||| | |||| | |||||||| ||||||||||||| ||    
T  7637011 gtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttg 7636912  T
Q  341 tgtccaactaat 352  Q
    ||||||||||||    
T  7636911 tgtccaactaat 7636900  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 7628641 - 7628524
Alignment:
Q  235 gttagtgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatgg 334  Q
    |||| |||||||||||||| |||||| |||||||| ||||||||| | ||| |||||||| ||| |||||| |||||| | ||||||||| | ||  |||    
T  7628641 gttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtgg 7628542  T
Q  335 atgctgtgtccaactaat 352  Q
    ||| ||||||||||||||    
T  7628541 atgttgtgtccaactaat 7628524  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 240 - 352
Target Start/End: Complemental strand, 7606184 - 7606072
Alignment:
Q  240 tgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgct 339  Q
    |||||||||||||| |||||| |||||||| ||||||||||| ||| |||||||||||  |||||| |||||| | | ||||||  ||||||||||||      
T  7606184 tgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtc 7606085  T
Q  340 gtgtccaactaat 352  Q
    ||| |||||||||    
T  7606084 gtgaccaactaat 7606072  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 7615194 - 7615086
Alignment:
Q  244 tttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgctgtgt 343  Q
    |||||||||| |||||| ||||||||||| |||||||||||| || |  |  ||| |||||| |||||| | ||||||||| | |||||||||| || ||    
T  7615194 tttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgt 7615095  T
Q  344 ccaactaat 352  Q
    |||||||||    
T  7615094 ccaactaat 7615086  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 7656312 - 7656404
Alignment:
Q  244 tttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggat 336  Q
    |||||||||| |||||| | ||| || ||||||||||| ||| |||||||||||| |||||| |||||| | ||||| ||| | |||||||||    
T  7656312 tttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatggat 7656404  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 7615291 - 7615229
Alignment:
Q  134 cagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcg 196  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||| || || |||||| ||||    
T  7615291 cagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcg 7615229  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 7637104 - 7637061
Alignment:
Q  135 agttccccgtggtttgatatttatggtaatgattttggatgggg 178  Q
    ||||| || ||||||||| |||||||||||||||||||||||||    
T  7637104 agttctccatggtttgatgtttatggtaatgattttggatgggg 7637061  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 7656227 - 7656277
Alignment:
Q  146 gtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcg 196  Q
    ||||||| ||||||||||||||||||||||||| || || |||||| ||||    
T  7656227 gtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcg 7656277  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 7606276 - 7606227
Alignment:
Q  135 agttccccgtggtttgatatttatggtaatgattttggatgggggaaacc 184  Q
    ||||| || ||||||||| |||||||||||||||| |||||||| |||||    
T  7606276 agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacc 7606227  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 39082393 - 39082357
Alignment:
Q  145 ggtttgatatttatggtaatgattttggatgggggaa 181  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  39082393 ggtttgatgtttatggtaatgattttggttgggggaa 39082357  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 40147426 - 40147509
Alignment:
Q  117 aatacatttgccagtaacagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagt 200  Q
    |||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||  |||| |||||| ||||||||    
T  40147426 aatacattagccagtagcaattccccgtggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagt 40147509  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 40147536 - 40147640
Alignment:
Q  240 tgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgct 339  Q
    ||||||||||||||||||||| ||||| || ||| ||||||| ||| ||||| |||||| |||||| |||||| | ||||||| | | |||||||||| |    
T  40147536 tgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgtt 40147635  T
Q  340 gtgtc 344  Q
    |||||    
T  40147636 gtgtc 40147640  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Complemental strand, 8102403 - 8102310
Alignment:
Q  240 tgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatg 333  Q
    |||||||||||||| |||||| |||||||| ||||||||||| ||| ||||| |||||| |||||| |||||| | ||||| |||  |||||||    
T  8102403 tgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatg 8102310  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 8102501 - 8102430
Alignment:
Q  129 agtaacagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagt 200  Q
    |||| |||||||| |||||||||| ||||||| ||| ||||||||||||| ||||| |||||| ||||||||    
T  8102501 agtagcagttcccagtggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagt 8102430  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 241 - 352
Target Start/End: Original strand, 8936264 - 8936375
Alignment:
Q  241 gtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgctg 340  Q
    |||||||| |||| |||||| |||||||| ||||||||||||||| |||| ||  ||| |||||| |||||| | ||||||||| | |||||||||| ||    
T  8936264 gtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccctcaattcatggatgttg 8936363  T
Q  341 tgtccaactaat 352  Q
     |||||||||||    
T  8936364 cgtccaactaat 8936375  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 241 - 352
Target Start/End: Original strand, 8913761 - 8913872
Alignment:
Q  241 gtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatgctg 340  Q
    |||||||  |||| |||||| |||| ||||||||||||||||||| |||||    ||| |||||| | |||| | |||||||| ||||||||||||| ||    
T  8913761 gtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttg 8913860  T
Q  341 tgtccaactaat 352  Q
    ||||||||||||    
T  8913861 tgtccaactaat 8913872  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 8941907 - 8942004
Alignment:
Q  240 tgtatttgctggaaaagaagacggtagtatagaccttcaagtttgtattccttacaagactttggaagcaatgagtaatgaccctaatttcatggatg 337  Q
    |||||||||||||| |||||| |||||||| ||||||||||| ||| |||||||| ||  |||||| |||||| | | ||||||   |||||||||||    
T  8941907 tgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatg 8942004  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 8936170 - 8936214
Alignment:
Q  134 cagttccccgtggtttgatatttatggtaatgattttggatgggg 178  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  8936170 cagttctccgtggtttgatgtttatggtaatgattttggatgggg 8936214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 8941816 - 8941865
Alignment:
Q  135 agttccccgtggtttgatatttatggtaatgattttggatgggggaaacc 184  Q
    ||||| || ||||||||| |||||||||||||||| |||||||| |||||    
T  8941816 agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacc 8941865  T

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Target: scaffold0190 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 4493 - 4448
Alignment:
Q  144 tggtttgatatttatggtaatgattttggatgggggaaacccgtgg 189  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  4493 tggtttgatgtttatggtaatgattttggttggggaaaacctgtgg 4448  T

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