View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17584_high_3 (Length: 332)
Name: NF17584_high_3
Description: NF17584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17584_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 16962041 - 16961743
Alignment:
| Q |
16 |
atcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggaca |
115 |
Q |
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| T |
16962041 |
atcatcataggcattgctagaggaattcaattcttacatacaggagttaatcctggcatatatggaaacaacataaagattgagaacattttgttggaca |
16961942 |
T |
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| Q |
116 |
ataatctcaatccaaaagttagtggatatagcattccattaattccatgcaaggttagaagaacaaattatatgtaatttcactcattcagtacttcatg |
215 |
Q |
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| T |
16961941 |
ataatctcaatccaaaagttagtggatatagcattccattaattccatccaaggttagaagaacaaattatatgtaatttcactcattcagtacttcatg |
16961842 |
T |
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| Q |
216 |
tttaagtctctaactctaatctatgatattttacttttcttattttcatttttcagaaaggttctgacagaaaacttaaagaacaaaatgcacacaatc |
314 |
Q |
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| T |
16961841 |
tttaagtctctaactctaatctatgatattttacttttcttattttcatttttcagaaaggttctgacagaaaacttaaagaacaaaatgcacacaatc |
16961743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 24827682 - 24827821
Alignment:
| Q |
16 |
atcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggaca |
115 |
Q |
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|||| |||||| ||||| |||||| |||| ||| |||||||||||||| |||||| |||| ||| ||||| | ||||||||||| |||||||| || |
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| T |
24827682 |
atcagcataggaattgcaagaggagttcagttcttacatacaggagttgctcctggaatatttggcaacaatttcaagattgagaatattttgttagatg |
24827781 |
T |
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| Q |
116 |
ataatctcaatccaaaagttagtggatatagcattccatt |
155 |
Q |
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| T |
24827782 |
atagtcttaatgcaaaagttagtggatacagaattccatt |
24827821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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